Literature DB >> 21552204

The RSC chromatin remodelling ATPase translocates DNA with high force and small step size.

George Sirinakis1, Cedric R Clapier, Ying Gao, Ramya Viswanathan, Bradley R Cairns, Yongli Zhang.   

Abstract

ATP-dependent chromatin remodelling complexes use the energy of ATP hydrolysis to reposition and reconfigure nucleosomes. Despite their diverse functions, all remodellers share highly conserved ATPase domains, many shown to translocate DNA. Understanding remodelling requires biophysical knowledge of the DNA translocation process: how the ATPase moves DNA and generates force, and how translocation and force generation are coupled on nucleosomes. Here, we characterize the real-time activity of a minimal RSC translocase 'motor' on bare DNA, using high-resolution optical tweezers and a 'tethered' translocase system. We observe on dsDNA a processivity of ∼35 bp, a speed of ∼25 bp/s, and a step size of 2.0 (±0.4, s.e.m.) bp. Surprisingly, the motor is capable of moving against high force, up to 30 pN, making it one of the most force-resistant motors known. We also provide evidence for DNA 'buckling' at initiation. These observations reveal the ATPase as a powerful DNA translocating motor capable of disrupting DNA-histone interactions by mechanical force.

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Year:  2011        PMID: 21552204      PMCID: PMC3116276          DOI: 10.1038/emboj.2011.141

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  59 in total

1.  Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system.

Authors:  P Orth; D Schnappinger; W Hillen; W Saenger; W Hinrichs
Journal:  Nat Struct Biol       Date:  2000-03

2.  ISWI induces nucleosome sliding on nicked DNA.

Authors:  G Längst; P B Becker
Journal:  Mol Cell       Date:  2001-11       Impact factor: 17.970

3.  Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

Authors:  Brent D Brower-Toland; Corey L Smith; Richard C Yeh; John T Lis; Craig L Peterson; Michelle D Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

4.  Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

Authors:  Hinrich Boeger; Joachim Griesenbeck; J Seth Strattan; Roger D Kornberg
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

5.  Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited.

Authors:  Brian P English; Wei Min; Antoine M van Oijen; Kang Taek Lee; Guobin Luo; Hongye Sun; Binny J Cherayil; S C Kou; X Sunney Xie
Journal:  Nat Chem Biol       Date:  2005-12-25       Impact factor: 15.040

6.  Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.

Authors:  Martin Zofall; Jim Persinger; Stefan R Kassabov; Blaine Bartholomew
Journal:  Nat Struct Mol Biol       Date:  2006-03-05       Impact factor: 15.369

7.  Direct observation of DNA distortion by the RSC complex.

Authors:  Giuseppe Lia; Elise Praly; Helder Ferreira; Chris Stockdale; Yuk Ching Tse-Dinh; David Dunlap; Vincent Croquette; David Bensimon; Tom Owen-Hughes
Journal:  Mol Cell       Date:  2006-02-03       Impact factor: 17.970

8.  Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  Nat Struct Mol Biol       Date:  2004-05-16       Impact factor: 15.369

9.  Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNA.

Authors:  Rebekka O Sprouse; Michael Brenowitz; David T Auble
Journal:  EMBO J       Date:  2006-03-16       Impact factor: 11.598

10.  ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.

Authors:  Gaku Mizuguchi; Xuetong Shen; Joe Landry; Wei-Hua Wu; Subhojit Sen; Carl Wu
Journal:  Science       Date:  2003-11-26       Impact factor: 47.728

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  49 in total

1.  Single-molecule observation of helix staggering, sliding, and coiled coil misfolding.

Authors:  Zhiqun Xi; Ying Gao; George Sirinakis; Honglian Guo; Yongli Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-26       Impact factor: 11.205

2.  Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC.

Authors:  Shuja Shafi Malik; Evan Rich; Ramya Viswanathan; Bradley R Cairns; Christopher J Fischer
Journal:  Biochemistry       Date:  2011-08-26       Impact factor: 3.162

Review 3.  Towards a Unified Model of SMC Complex Function.

Authors:  Markus Hassler; Indra A Shaltiel; Christian H Haering
Journal:  Curr Biol       Date:  2018-11-05       Impact factor: 10.834

4.  SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes.

Authors:  Ning Liu; Craig L Peterson; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2011-08-22       Impact factor: 4.272

5.  Kinetically coupled folding of a single HIV-1 glycoprotein 41 complex in viral membrane fusion and inhibition.

Authors:  Junyi Jiao; Aleksander A Rebane; Lu Ma; Ying Gao; Yongli Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

6.  Changing chromatin fiber conformation by nucleosome repositioning.

Authors:  Oliver Müller; Nick Kepper; Robert Schöpflin; Ramona Ettig; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

Review 7.  Energetics, kinetics, and pathway of SNARE folding and assembly revealed by optical tweezers.

Authors:  Yongli Zhang
Journal:  Protein Sci       Date:  2017-03-08       Impact factor: 6.725

Review 8.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

9.  Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation.

Authors:  Gregor Heiss; Evelyn Ploetz; Lena Voith von Voithenberg; Ramya Viswanathan; Samson Glaser; Peter Schluesche; Sushi Madhira; Michael Meisterernst; David T Auble; Don C Lamb
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

10.  Single reconstituted neuronal SNARE complexes zipper in three distinct stages.

Authors:  Ying Gao; Sylvain Zorman; Gregory Gundersen; Zhiqun Xi; Lu Ma; George Sirinakis; James E Rothman; Yongli Zhang
Journal:  Science       Date:  2012-08-16       Impact factor: 47.728

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