Literature DB >> 12176389

Structure of yeast RNA polymerase II in solution: implications for enzyme regulation and interaction with promoter DNA.

John L Craighead1, Wei-hau Chang, Francisco J Asturias.   

Abstract

An 18 A resolution structure of the 12-subunit yeast RNA polymerase II (RNAPII) calculated from electron microscope images of single particles preserved in amorphous ice reveals the conformation of the enzyme in solution. The Rpb4/Rpb7 polymerase subunit complex was localized and found to be ideally positioned to determine the path of the nascent RNA transcript. The RNAPII structure suggests a revised mode of interaction with promoter DNA and demonstrates that regulation of RNAPII must involve structural changes that render the enzyme competent for initiation.

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Year:  2002        PMID: 12176389     DOI: 10.1016/s0969-2126(02)00813-4

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  14 in total

1.  Architecture of initiation-competent 12-subunit RNA polymerase II.

Authors:  Karim-Jean Armache; Hubert Kettenberger; Patrick Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-13       Impact factor: 11.205

2.  Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription.

Authors:  David A Bushnell; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-13       Impact factor: 11.205

3.  RNA polymerase II at initiation.

Authors:  Francisco J Asturias; John L Craighead
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-02       Impact factor: 11.205

4.  Loss of the Rpb4/Rpb7 subcomplex in a mutant form of the Rpb6 subunit shared by RNA polymerases I, II, and III.

Authors:  Qian Tan; Meredith H Prysak; Nancy A Woychik
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

5.  Conformational flexibility of RNA polymerase III during transcriptional elongation.

Authors:  Carlos Fernández-Tornero; Bettina Böttcher; Umar Jan Rashid; Ulrich Steuerwald; Beate Flörchinger; Damien P Devos; Doris Lindner; Christoph W Müller
Journal:  EMBO J       Date:  2010-10-22       Impact factor: 11.598

6.  Mapping RNA exit channel on transcribing RNA polymerase II by FRET analysis.

Authors:  Chin-Yu Chen; Chia-Chi Chang; Chi-Fu Yen; Michael T-K Chiu; Wei-Hau Chang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-24       Impact factor: 11.205

7.  SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs.

Authors:  Tanvir R Shaikh; Haixiao Gao; William T Baxter; Francisco J Asturias; Nicolas Boisset; Ardean Leith; Joachim Frank
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

8.  TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle.

Authors:  Sarah Schulz; Andreas Gietl; Katherine Smollett; Philip Tinnefeld; Finn Werner; Dina Grohmann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-15       Impact factor: 11.205

9.  Mediator structural conservation and implications for the regulation mechanism.

Authors:  Gang Cai; Tsuyoshi Imasaki; Yuichiro Takagi; Francisco J Asturias
Journal:  Structure       Date:  2009-04-15       Impact factor: 5.006

10.  Structure of a RSC-nucleosome complex and insights into chromatin remodeling.

Authors:  Yuriy Chaban; Chukwudi Ezeokonkwo; Wen-Hsiang Chung; Fan Zhang; Roger D Kornberg; Barbara Maier-Davis; Yahli Lorch; Francisco J Asturias
Journal:  Nat Struct Mol Biol       Date:  2008-11-23       Impact factor: 15.369

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