Literature DB >> 21810178

Mechanisms for ATP-dependent chromatin remodelling: the means to the end.

Andrew Flaus1, Tom Owen-Hughes.   

Abstract

Chromatin remodelling is the ATP-dependent change in nucleosome organisation driven by Snf2 family ATPases. The biochemistry of this process depends on the behaviours of ATP-dependent motor proteins and their dynamic nucleosome substrates, which brings significant technical and conceptual challenges. Steady progress has been made in characterising the polypeptides of which these enzymes are comprised. Divergence in the sequences of different subfamilies of Snf2-related proteins suggests that the motors are adapted for different functions. Recently, structural insights have suggested that the Snf2 ATPase acts as a context-sensitive DNA translocase. This may have arisen as a means to enable efficient access to DNA in the high density of the eukaryotic nucleus. How the enzymes engage nucleosomes and how the network of noncovalent interactions within the nucleosome respond to the force applied remains unclear, and it remains prudent to recognise the potential for both DNA distortions and dynamics within the underlying histone octamer structure.
© 2011 The Authors Journal compilation © 2011 FEBS.

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Year:  2011        PMID: 21810178      PMCID: PMC4162296          DOI: 10.1111/j.1742-4658.2011.08281.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  123 in total

1.  Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains.

Authors:  B R Cairns; A Schlichter; H Erdjument-Bromage; P Tempst; R D Kornberg; F Winston
Journal:  Mol Cell       Date:  1999-11       Impact factor: 17.970

Review 2.  Nucleosome structural studies.

Authors:  Song Tan; Curt A Davey
Journal:  Curr Opin Struct Biol       Date:  2010-12-19       Impact factor: 6.809

Review 3.  ATP-dependent chromatin remodeling and DNA double-strand break repair.

Authors:  Haico van Attikum; Susan M Gasser
Journal:  Cell Cycle       Date:  2005-08-02       Impact factor: 4.534

4.  Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair.

Authors:  Li Fan; Andrew S Arvai; Priscilla K Cooper; Shigenori Iwai; Fumio Hanaoka; John A Tainer
Journal:  Mol Cell       Date:  2006-04-07       Impact factor: 17.970

5.  SnapShot: Chromatin remodeling: SWI/SNF.

Authors:  Margaret M Kasten; Cedric R Clapier; Bradley R Cairns
Journal:  Cell       Date:  2011-01-21       Impact factor: 41.582

6.  Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome.

Authors:  Ed Luk; Anand Ranjan; Peter C Fitzgerald; Gaku Mizuguchi; Yingzi Huang; Debbie Wei; Carl Wu
Journal:  Cell       Date:  2010-11-24       Impact factor: 41.582

7.  The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor.

Authors:  H G Tran; D J Steger; V R Iyer; A D Johnson
Journal:  EMBO J       Date:  2000-05-15       Impact factor: 11.598

8.  Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity.

Authors:  Manolis Papamichos-Chronakis; Shinya Watanabe; Oliver J Rando; Craig L Peterson
Journal:  Cell       Date:  2011-01-21       Impact factor: 41.582

9.  The ISWI and CHD1 chromatin remodelling activities influence ADH2 expression and chromatin organization.

Authors:  Barbara Xella; Colin Goding; Eleonora Agricola; Ernesto Di Mauro; Micaela Caserta
Journal:  Mol Microbiol       Date:  2006-03       Impact factor: 3.501

10.  Single-nucleosome mapping of histone modifications in S. cerevisiae.

Authors:  Chih Long Liu; Tommy Kaplan; Minkyu Kim; Stephen Buratowski; Stuart L Schreiber; Nir Friedman; Oliver J Rando
Journal:  PLoS Biol       Date:  2005-08-30       Impact factor: 8.029

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  56 in total

1.  Structure of chromatin remodeler Swi2/Snf2 in the resting state.

Authors:  Xian Xia; Xiaoyu Liu; Tong Li; Xianyang Fang; Zhucheng Chen
Journal:  Nat Struct Mol Biol       Date:  2016-07-11       Impact factor: 15.369

Review 2.  Chromatin and DNA replication.

Authors:  David M MacAlpine; Geneviève Almouzni
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

Review 3.  Nucleosome remodeling and epigenetics.

Authors:  Peter B Becker; Jerry L Workman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

4.  Changing chromatin fiber conformation by nucleosome repositioning.

Authors:  Oliver Müller; Nick Kepper; Robert Schöpflin; Ramona Ettig; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

5.  The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation.

Authors:  Xiaoyuan Song; Josephine Bowen; Wei Miao; Yifan Liu; Martin A Gorovsky
Journal:  Genes Dev       Date:  2012-03-15       Impact factor: 11.361

6.  First-in-Class Inhibitors of Oncogenic CHD1L with Preclinical Activity against Colorectal Cancer.

Authors:  Joshua M Abbott; Qiong Zhou; Hector Esquer; Laura Pike; Travis P Broneske; Sébastien Rinaldetti; Adedoyin D Abraham; Dominique A Ramirez; Paul J Lunghofer; Todd M Pitts; Daniel P Regan; Aik Choon Tan; Daniel L Gustafson; Wells A Messersmith; Daniel V LaBarbera
Journal:  Mol Cancer Ther       Date:  2020-06-04       Impact factor: 6.261

7.  The histone deacetylase inhibitor trichostatin a promotes totipotency in the male gametophyte.

Authors:  Hui Li; Mercedes Soriano; Jan Cordewener; Jose M Muiño; Tjitske Riksen; Hiroyuki Fukuoka; Gerco C Angenent; Kim Boutilier
Journal:  Plant Cell       Date:  2014-01-24       Impact factor: 11.277

8.  Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects.

Authors:  Yi Sang; Claudia O Silva-Ortega; Shuang Wu; Nobutoshi Yamaguchi; Miin-Feng Wu; Jennifer Pfluger; C Stewart Gillmor; Kimberly L Gallagher; Doris Wagner
Journal:  Plant J       Date:  2012-10-22       Impact factor: 6.417

9.  Multiple modes of regulation of the human Ino80 SNF2 ATPase by subunits of the INO80 chromatin-remodeling complex.

Authors:  Lu Chen; Ronald C Conaway; Joan W Conaway
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

10.  Combined gene dosage requirement for SWI/SNF catalytic subunits during early mammalian development.

Authors:  Stephanie L Smith-Roe; Scott J Bultman
Journal:  Mamm Genome       Date:  2012-10-18       Impact factor: 2.957

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