Literature DB >> 24008565

Nucleosome sliding mechanisms: new twists in a looped history.

Felix Mueller-Planitz1, Henrike Klinker, Peter B Becker.   

Abstract

Nucleosomes, the basic organizational units of chromatin, package and regulate eukaryotic genomes. ATP-dependent nucleosome-remodeling factors endow chromatin with structural flexibility by promoting assembly or disruption of nucleosomes and the exchange of histone variants. Furthermore, most remodeling factors induce nucleosome movements through sliding of histone octamers on DNA. We summarize recent progress toward unraveling the basic nucleosome sliding mechanism and the interplay of the remodelers' DNA translocases with accessory domains. Such domains optimize and regulate the basic sliding reaction and exploit sliding to achieve diverse structural effects, such as nucleosome positioning or eviction, or the regular spacing of nucleosomes in chromatin.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24008565     DOI: 10.1038/nsmb.2648

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  96 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

2.  A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling.

Authors:  Ralf Strohner; Malte Wachsmuth; Karoline Dachauer; Jacek Mazurkiewicz; Julia Hochstatter; Karsten Rippe; Gernot Längst
Journal:  Nat Struct Mol Biol       Date:  2005-07-17       Impact factor: 15.369

3.  Dependency of ISW1a chromatin remodeling on extranucleosomal DNA.

Authors:  Vamsi K Gangaraju; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

5.  Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF.

Authors:  A Hamiche; J G Kang; C Dennis; H Xiao; C Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

6.  Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes.

Authors:  Chris Stockdale; Andrew Flaus; Helder Ferreira; Tom Owen-Hughes
Journal:  J Biol Chem       Date:  2006-04-10       Impact factor: 5.157

7.  Nucleosome-driven transcription factor binding and gene regulation.

Authors:  Cecilia Ballaré; Giancarlo Castellano; Laura Gaveglia; Sonja Althammer; Juan González-Vallinas; Eduardo Eyras; Francois Le Dily; Roser Zaurin; Daniel Soronellas; Guillermo P Vicent; Miguel Beato
Journal:  Mol Cell       Date:  2012-11-21       Impact factor: 17.970

8.  Architecture of the SWI/SNF-nucleosome complex.

Authors:  Mekonnen Lemma Dechassa; Bei Zhang; Rachel Horowitz-Scherer; Jim Persinger; Christopher L Woodcock; Craig L Peterson; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2008-07-21       Impact factor: 4.272

9.  A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization.

Authors:  Triantaffyllos Gkikopoulos; Pieta Schofield; Vijender Singh; Marina Pinskaya; Jane Mellor; Michaela Smolle; Jerry L Workman; Geoffrey J Barton; Tom Owen-Hughes
Journal:  Science       Date:  2011-09-23       Impact factor: 47.728

10.  The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Authors:  Lisa R Racki; Janet G Yang; Nariman Naber; Peretz D Partensky; Ashley Acevedo; Thomas J Purcell; Roger Cooke; Yifan Cheng; Geeta J Narlikar
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

View more
  48 in total

1.  Structural analysis of nucleosomal barrier to transcription.

Authors:  Daria A Gaykalova; Olga I Kulaeva; Olesya Volokh; Alexey K Shaytan; Fu-Kai Hsieh; Mikhail P Kirpichnikov; Olga S Sokolova; Vasily M Studitsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

2.  Structure of chromatin remodeler Swi2/Snf2 in the resting state.

Authors:  Xian Xia; Xiaoyu Liu; Tong Li; Xianyang Fang; Zhucheng Chen
Journal:  Nat Struct Mol Biol       Date:  2016-07-11       Impact factor: 15.369

Review 3.  Chromatin modifiers and histone modifications in bone formation, regeneration, and therapeutic intervention for bone-related disease.

Authors:  Jonathan A R Gordon; Janet L Stein; Jennifer J Westendorf; Andre J van Wijnen
Journal:  Bone       Date:  2015-03-31       Impact factor: 4.398

4.  Remodelling without a power stroke.

Authors:  Arnob Dutta; Jerry L Workman
Journal:  EMBO Rep       Date:  2013-10-25       Impact factor: 8.807

Review 5.  From profiles to function in epigenomics.

Authors:  Stefan H Stricker; Anna Köferle; Stephan Beck
Journal:  Nat Rev Genet       Date:  2016-11-21       Impact factor: 53.242

6.  Brg1 Controls the Expression of Pax7 to Promote Viability and Proliferation of Mouse Primary Myoblasts.

Authors:  Teresita Padilla-Benavides; Brian T Nasipak; Anthony N Imbalzano
Journal:  J Cell Physiol       Date:  2015-12       Impact factor: 6.384

7.  Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure.

Authors:  Xiaoyu Liu; Meijing Li; Xian Xia; Xueming Li; Zhucheng Chen
Journal:  Nature       Date:  2017-04-19       Impact factor: 49.962

Review 8.  An evolving view of epigenetic complexity in the brain.

Authors:  Irfan A Qureshi; Mark F Mehler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-09-26       Impact factor: 6.237

9.  Pif1, RPA, and FEN1 modulate the ability of DNA polymerase δ to overcome protein barriers during DNA synthesis.

Authors:  Melanie A Sparks; Peter M Burgers; Roberto Galletto
Journal:  J Biol Chem       Date:  2020-09-10       Impact factor: 5.157

10.  In silico evidence for sequence-dependent nucleosome sliding.

Authors:  Joshua Lequieu; David C Schwartz; Juan J de Pablo
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-18       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.