Literature DB >> 11566811

Bilayers of nucleosome core particles.

A Leforestier1, J Dubochet, F Livolant.   

Abstract

Among the multiple effects involved in chromatin condensation and decondensation processes, interactions between nucleosome core particles are suspected to play a crucial role. We analyze them in the absence of linker DNA and added proteins, after the self-assembly of isolated nucleosome core particles under controlled ionic conditions. We describe an original lamellar mesophase forming tubules on the mesoscopic scale. High resolution imaging of cryosections of vitrified samples reveals how nucleosome core particles stack on top of one another into columns which themselves align to form bilayers that repel one another through a solvent layer. We deduce from this structural organization how the particles interact through attractive interactions between top and bottom faces and lateral polar interactions that originate in the heterogeneous charge distribution at the surface of the particle. These interactions, at work under conditions comparable with those found in the living cell, should be of importance in the mechanisms governing chromatin compaction in vivo.

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Year:  2001        PMID: 11566811      PMCID: PMC1301712          DOI: 10.1016/S0006-3495(01)75888-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

1.  Chiral discotic columnar germs of nucleosome core particles.

Authors:  F Livolant; A Leforestier
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

2.  The language of covalent histone modifications.

Authors:  B D Strahl; C D Allis
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

3.  Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure.

Authors:  Y Cui; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

4.  Asymmetries in the nucleosome core particle at 2.5 A resolution.

Authors:  J M Harp; B L Hanson; D E Timm; G J Bunick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-12

Review 5.  RNA polymerase II elongation through chromatin.

Authors:  G Orphanides; D Reinberg
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

6.  Compact oligomers and nucleosome phasing.

Authors:  K Tatchell; K E Van Holde
Journal:  Proc Natl Acad Sci U S A       Date:  1978-08       Impact factor: 11.205

7.  X-ray and electron microscope analyses of crystals of nucleosome cores.

Authors:  J T Finch; A Klug
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

Review 8.  The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides.

Authors:  G S Manning
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

9.  [Ultrastructural and chemical study of the chromatin during spermiogenesis of the fish Scyliorhinus caniculus (L.) (author's transl)].

Authors:  M Gusse; P Chevaillier
Journal:  Cytobiologie       Date:  1978-04

Review 10.  The histones.

Authors:  R Sperling; E J Wachtel
Journal:  Adv Protein Chem       Date:  1981
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  19 in total

1.  X-ray diffraction characterization of the dense phases formed by nucleosome core particles.

Authors:  Stéphanie Mangenot; Amélie Leforestier; Dominique Durand; Françoise Livolant
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

2.  Cryo-transmission electron microscopy of frozen-hydrated sections of Escherichia coli and Pseudomonas aeruginosa.

Authors:  Valério R F Matias; Ashraf Al-Amoudi; Jacques Dubochet; Terry J Beveridge
Journal:  J Bacteriol       Date:  2003-10       Impact factor: 3.490

Review 3.  Cryo-electron microscopy of vitreous sections.

Authors:  Ashraf Al-Amoudi; Jiin-Ju Chang; Amélie Leforestier; Alasdair McDowall; Laurée Michel Salamin; Lars P O Norlén; Karsten Richter; Nathalie Sartori Blanc; Daniel Studer; Jacques Dubochet
Journal:  EMBO J       Date:  2004-08-19       Impact factor: 11.598

4.  Textural analysis of a mesophase with banana shaped molecules.

Authors:  Yu A Nastishin; M F Achard; H T Nguyen; M Kleman
Journal:  Eur Phys J E Soft Matter       Date:  2003-12       Impact factor: 1.890

5.  Liquid crystal helical ribbons as isometric textures.

Authors:  M-F Achard; M Kleman; Yu A Nastishin; H-T Nguyen
Journal:  Eur Phys J E Soft Matter       Date:  2005-01-31       Impact factor: 1.890

6.  Structural elements of bulk chromatin within metaphase chromosomes.

Authors:  Juan Manuel Caravaca; Silvia Caño; Isaac Gállego; Joan-Ramon Daban
Journal:  Chromosome Res       Date:  2005-10-24       Impact factor: 5.239

7.  Dense chromatin plates in metaphase chromosomes.

Authors:  Isaac Gállego; Pablo Castro-Hartmann; Juan Manuel Caravaca; Silvia Caño; Joan-Ramon Daban
Journal:  Eur Biophys J       Date:  2009-02-03       Impact factor: 1.733

8.  Histone octamer helical tubes suggest that an internucleosomal four-helix bundle stabilizes the chromatin fiber.

Authors:  Timothy D Frouws; Hugh-G Patterton; Bryan T Sewell
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

9.  Salt-induced conformation and interaction changes of nucleosome core particles.

Authors:  Stéphanie Mangenot; Amélie Leforestier; Patrice Vachette; Dominique Durand; Françoise Livolant
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

10.  The Influence of Ionic Environment and Histone Tails on Columnar Order of Nucleosome Core Particles.

Authors:  Nikolay V Berezhnoy; Ying Liu; Abdollah Allahverdi; Renliang Yang; Chun-Jen Su; Chuan-Fa Liu; Nikolay Korolev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2016-04-26       Impact factor: 4.033

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