Literature DB >> 28512350

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Cedric R Clapier1, Janet Iwasa2, Bradley R Cairns1, Craig L Peterson3.   

Abstract

Cells utilize diverse ATP-dependent nucleosome-remodelling complexes to carry out histone sliding, ejection or the incorporation of histone variants, suggesting that different mechanisms of action are used by the various chromatin-remodelling complex subfamilies. However, all chromatin-remodelling complex subfamilies contain an ATPase-translocase 'motor' that translocates DNA from a common location within the nucleosome. In this Review, we discuss (and illustrate with animations) an alternative, unifying mechanism of chromatin remodelling, which is based on the regulation of DNA translocation. We propose the 'hourglass' model of remodeller function, in which each remodeller subfamily utilizes diverse specialized proteins and protein domains to assist in nucleosome targeting or to differentially detect nucleosome epitopes. These modules converge to regulate a common DNA translocation mechanism, to inform the conserved ATPase 'motor' on whether and how to apply DNA translocation, which together achieve the various outcomes of chromatin remodelling: nucleosome assembly, chromatin access and nucleosome editing.

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Year:  2017        PMID: 28512350     DOI: 10.1038/nrm.2017.26

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  194 in total

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4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

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5.  The histone H4 tail regulates the conformation of the ATP-binding pocket in the SNF2h chromatin remodeling enzyme.

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Journal:  J Mol Biol       Date:  2014-03-04       Impact factor: 5.469

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Authors:  Boris G Wilson; Charles W M Roberts
Journal:  Nat Rev Cancer       Date:  2011-06-09       Impact factor: 60.716

7.  Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes.

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Journal:  J Biol Chem       Date:  2006-04-10       Impact factor: 5.157

8.  Eaf1 is the platform for NuA4 molecular assembly that evolutionarily links chromatin acetylation to ATP-dependent exchange of histone H2A variants.

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9.  The ISWI chromatin remodeler organizes the hsrω ncRNA-containing omega speckle nuclear compartments.

Authors:  Maria C Onorati; Sandra Lazzaro; Moushami Mallik; Antonia M R Ingrassia; Anna P Carreca; Anand K Singh; Deo Prakash Chaturvedi; Subhash C Lakhotia; Davide F V Corona
Journal:  PLoS Genet       Date:  2011-05-26       Impact factor: 5.917

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  279 in total

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6.  Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate male germline transcription in the mouse.

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Review 7.  MUC1-C in chronic inflammation and carcinogenesis; emergence as a target for cancer treatment.

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8.  Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.

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Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

9.  CHD7 regulates cardiovascular development through ATP-dependent and -independent activities.

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Review 10.  Transcriptional and Epigenetic Regulation by the Mechanistic Target of Rapamycin Complex 1 Pathway.

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