Literature DB >> 18448237

Cross-scale sensitivity analysis of a non-small cell lung cancer model: linking molecular signaling properties to cellular behavior.

Zhihui Wang1, Christina M Birch, Thomas S Deisboeck.   

Abstract

Sensitivity analysis is an effective tool for systematically identifying specific perturbations in parameters that have significant effects on the behavior of a given biosystem, at the scale investigated. In this work, using a two-dimensional, multiscale non-small cell lung cancer (NSCLC) model, we examine the effects of perturbations in system parameters which span both molecular and cellular levels, i.e. across scales of interest. This is achieved by first linking molecular and cellular activities and then assessing the influence of parameters at the molecular level on the tumor's spatio-temporal expansion rate, which serves as the output behavior at the cellular level. Overall, the algorithm operated reliably over relatively large variations of most parameters, hence confirming the robustness of the model. However, three pathway components (proteins PKC, MEK, and ERK) and eleven reaction steps were determined to be of critical importance by employing a sensitivity coefficient as an evaluation index. Each of these sensitive parameters exhibited a similar changing pattern in that a relatively larger increase or decrease in its value resulted in a lesser influence on the system's cellular performance. This study provides a novel cross-scaled approach to analyzing sensitivities of computational model parameters and proposes its application to interdisciplinary biomarker studies.

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Year:  2008        PMID: 18448237      PMCID: PMC2430419          DOI: 10.1016/j.biosystems.2008.03.002

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  48 in total

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Review 5.  Identification and review of sensitivity analysis methods.

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6.  Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories.

Authors:  Brian P Ingalls; Herbert M Sauro
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7.  The effects of growth factors associated with osteoblasts on prostate carcinoma proliferation and chemotaxis: implications for the development of metastatic disease.

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Review 8.  TGF-beta signaling in cancer--a double-edged sword.

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Journal:  Trends Cell Biol       Date:  2001-11       Impact factor: 20.808

9.  Insulin-like growth factor-I inhibits cell growth in the a549 non-small lung cancer cell line.

Authors:  Yuzo Kodama; Robert C Baxter; Janet L Martin
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10.  Epidermal growth factor receptor in non-small-cell lung carcinomas: correlation between gene copy number and protein expression and impact on prognosis.

Authors:  Fred R Hirsch; Marileila Varella-Garcia; Paul A Bunn; Michael V Di Maria; Robert Veve; Roy M Bremmes; Anna E Barón; Chan Zeng; Wilbur A Franklin
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  16 in total

Review 1.  Systems glycobiology: biochemical reaction networks regulating glycan structure and function.

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Review 2.  Integrated PK-PD and agent-based modeling in oncology.

Authors:  Zhihui Wang; Joseph D Butner; Vittorio Cristini; Thomas S Deisboeck
Journal:  J Pharmacokinet Pharmacodyn       Date:  2015-01-15       Impact factor: 2.745

3.  Discovering Molecular Targets in Cancer with Multiscale Modeling.

Authors:  Zhihui Wang; Veronika Bordas; Thomas S Deisboeck
Journal:  Drug Dev Res       Date:  2011-02-01       Impact factor: 4.360

Review 4.  Simulating cancer growth with multiscale agent-based modeling.

Authors:  Zhihui Wang; Joseph D Butner; Romica Kerketta; Vittorio Cristini; Thomas S Deisboeck
Journal:  Semin Cancer Biol       Date:  2014-05-02       Impact factor: 15.707

5.  Identifying therapeutic targets in a combined EGFR-TGFβR signalling cascade using a multiscale agent-based cancer model.

Authors:  Zhihui Wang; Veronika Bordas; Jonathan Sagotsky; Thomas S Deisboeck
Journal:  Math Med Biol       Date:  2010-12-08       Impact factor: 1.854

Review 6.  Multiscale cancer modeling.

Authors:  Thomas S Deisboeck; Zhihui Wang; Paul Macklin; Vittorio Cristini
Journal:  Annu Rev Biomed Eng       Date:  2011-08-15       Impact factor: 9.590

7.  Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model.

Authors:  Zhihui Wang; Christina M Birch; Jonathan Sagotsky; Thomas S Deisboeck
Journal:  Bioinformatics       Date:  2009-07-04       Impact factor: 6.937

8.  The road to ERK activation: Do neurons take alternate routes?

Authors:  Nadiatou Miningou; Kim T Blackwell
Journal:  Cell Signal       Date:  2020-01-13       Impact factor: 4.315

9.  Development of a sampling-based global sensitivity analysis workflow for multiscale computational cancer models.

Authors:  Zhihui Wang; Thomas S Deisboeck; Vittorio Cristini
Journal:  IET Syst Biol       Date:  2014-10       Impact factor: 1.615

10.  Dealing with diversity in computational cancer modeling.

Authors:  David Johnson; Steve McKeever; Georgios Stamatakos; Dimitra Dionysiou; Norbert Graf; Vangelis Sakkalis; Konstantinos Marias; Zhihui Wang; Thomas S Deisboeck
Journal:  Cancer Inform       Date:  2013-05-07
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