Literature DB >> 21529163

Multiscale cancer modeling.

Thomas S Deisboeck1, Zhihui Wang1, Paul Macklin2, Vittorio Cristini3,4.   

Abstract

Simulating cancer behavior across multiple biological scales in space and time, i.e., multiscale cancer modeling, is increasingly being recognized as a powerful tool to refine hypotheses, focus experiments, and enable more accurate predictions. A growing number of examples illustrate the value of this approach in providing quantitative insights in the initiation, progression, and treatment of cancer. In this review, we introduce the most recent and important multiscale cancer modeling works that have successfully established a mechanistic link between different biological scales. Biophysical, biochemical, and biomechanical factors are considered in these models. We also discuss innovative, cutting-edge modeling methods that are moving predictive multiscale cancer modeling toward clinical application. Furthermore, because the development of multiscale cancer models requires a new level of collaboration among scientists from a variety of fields such as biology, medicine, physics, mathematics, engineering, and computer science, an innovative Web-based infrastructure is needed to support this growing community.

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Year:  2011        PMID: 21529163      PMCID: PMC3883359          DOI: 10.1146/annurev-bioeng-071910-124729

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  97 in total

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Authors:  J P Ward; J R King
Journal:  IMA J Math Appl Med Biol       Date:  1999-06

Review 2.  Systems biology in drug discovery.

Authors:  Eugene C Butcher; Ellen L Berg; Eric J Kunkel
Journal:  Nat Biotechnol       Date:  2004-10       Impact factor: 54.908

3.  Development of a three-dimensional multiscale agent-based tumor model: simulating gene-protein interaction profiles, cell phenotypes and multicellular patterns in brain cancer.

Authors:  Le Zhang; Chaitanya A Athale; Thomas S Deisboeck
Journal:  J Theor Biol       Date:  2006-07-27       Impact factor: 2.691

4.  Variable-free exploration of stochastic models: a gene regulatory network example.

Authors:  Radek Erban; Thomas A Frewen; Xiao Wang; Timothy C Elston; Ronald Coifman; Boaz Nadler; Ioannis G Kevrekidis
Journal:  J Chem Phys       Date:  2007-04-21       Impact factor: 3.488

Review 5.  The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems.

Authors:  Dawn C Walker; Jennifer Southgate
Journal:  Brief Bioinform       Date:  2009-03-17       Impact factor: 11.622

6.  BioModels.net Web Services, a free and integrated toolkit for computational modelling software.

Authors:  Chen Li; Mélanie Courtot; Nicolas Le Novère; Camille Laibe
Journal:  Brief Bioinform       Date:  2009-11-25       Impact factor: 11.622

Review 7.  Multi-scale modelling in computational biomedicine.

Authors:  Peter M A Sloot; Alfons G Hoekstra
Journal:  Brief Bioinform       Date:  2009-12-22       Impact factor: 11.622

8.  Nonlinear modelling of cancer: bridging the gap between cells and tumours.

Authors:  J S Lowengrub; H B Frieboes; F Jin; Y-L Chuang; X Li; P Macklin; S M Wise; V Cristini
Journal:  Nonlinearity       Date:  2010

9.  A hybrid cellular automaton model of clonal evolution in cancer: the emergence of the glycolytic phenotype.

Authors:  P Gerlee; A R A Anderson
Journal:  J Theor Biol       Date:  2007-11-04       Impact factor: 2.691

10.  Mathematical modelling of tumour acidity.

Authors:  Kieran Smallbone; Robert A Gatenby; Philip K Maini
Journal:  J Theor Biol       Date:  2008-08-07       Impact factor: 2.691

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  106 in total

Review 1.  Integration of experimental and computational approaches to sprouting angiogenesis.

Authors:  Shayn M Peirce; Feilim Mac Gabhann; Victoria L Bautch
Journal:  Curr Opin Hematol       Date:  2012-05       Impact factor: 3.284

2.  Quantifying trophoblast migration: In vitro approaches to address in vivo situations.

Authors:  Joanna James; Win Tun; Alys Clark
Journal:  Cell Adh Migr       Date:  2015-10-19       Impact factor: 3.405

Review 3.  Single-Cell Migration in Complex Microenvironments: Mechanics and Signaling Dynamics.

Authors:  Michael Mak; Fabian Spill; Roger D Kamm; Muhammad H Zaman
Journal:  J Biomech Eng       Date:  2016-02       Impact factor: 2.097

Review 4.  Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers.

Authors:  Robert Clarke; John J Tyson; Ming Tan; William T Baumann; Lu Jin; Jianhua Xuan; Yue Wang
Journal:  Endocr Relat Cancer       Date:  2019-06       Impact factor: 5.678

Review 5.  A systems approach to clinical oncology uses deep phenotyping to deliver personalized care.

Authors:  James T Yurkovich; Qiang Tian; Nathan D Price; Leroy Hood
Journal:  Nat Rev Clin Oncol       Date:  2019-10-16       Impact factor: 66.675

6.  Mathematical model formulation and validation of water and solute transport in whole hamster pancreatic islets.

Authors:  James D Benson; Charles T Benson; John K Critser
Journal:  Math Biosci       Date:  2014-06-17       Impact factor: 2.144

7.  Structured models of cell migration incorporating molecular binding processes.

Authors:  Pia Domschke; Dumitru Trucu; Alf Gerisch; Mark A J Chaplain
Journal:  J Math Biol       Date:  2017-04-12       Impact factor: 2.259

8.  A mesoscopic simulator to uncover heterogeneity and evolutionary dynamics in tumors.

Authors:  Juan Jiménez-Sánchez; Álvaro Martínez-Rubio; Anton Popov; Julián Pérez-Beteta; Youness Azimzade; David Molina-García; Juan Belmonte-Beitia; Gabriel F Calvo; Víctor M Pérez-García
Journal:  PLoS Comput Biol       Date:  2021-02-10       Impact factor: 4.475

9.  A multiphase model for three-dimensional tumor growth.

Authors:  G Sciumè; S Shelton; Wg Gray; Ct Miller; F Hussain; M Ferrari; P Decuzzi; Ba Schrefler
Journal:  New J Phys       Date:  2013-01       Impact factor: 3.729

10.  Serial diffusion MRI to monitor and model treatment response of the targeted nanotherapy CRLX101.

Authors:  Thomas S C Ng; David Wert; Hargun Sohi; Daniel Procissi; David Colcher; Andrew A Raubitschek; Russell E Jacobs
Journal:  Clin Cancer Res       Date:  2013-03-26       Impact factor: 12.531

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