Literature DB >> 24793698

Simulating cancer growth with multiscale agent-based modeling.

Zhihui Wang1, Joseph D Butner2, Romica Kerketta3, Vittorio Cristini4, Thomas S Deisboeck5.   

Abstract

There have been many techniques developed in recent years to in silico model a variety of cancer behaviors. Agent-based modeling is a specific discrete-based hybrid modeling approach that allows simulating the role of diversity in cell populations as well as within each individual cell; it has therefore become a powerful modeling method widely used by computational cancer researchers. Many aspects of tumor morphology including phenotype-changing mutations, the adaptation to microenvironment, the process of angiogenesis, the influence of extracellular matrix, reactions to chemotherapy or surgical intervention, the effects of oxygen and nutrient availability, and metastasis and invasion of healthy tissues have been incorporated and investigated in agent-based models. In this review, we introduce some of the most recent agent-based models that have provided insight into the understanding of cancer growth and invasion, spanning multiple biological scales in time and space, and we further describe several experimentally testable hypotheses generated by those models. We also discuss some of the current challenges of multiscale agent-based cancer models.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Drug discovery; Mathematical modeling; Signaling pathway; Translational research; Tumor growth and invasion

Mesh:

Year:  2014        PMID: 24793698      PMCID: PMC4216775          DOI: 10.1016/j.semcancer.2014.04.001

Source DB:  PubMed          Journal:  Semin Cancer Biol        ISSN: 1044-579X            Impact factor:   15.707


  83 in total

Review 1.  The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems.

Authors:  Dawn C Walker; Jennifer Southgate
Journal:  Brief Bioinform       Date:  2009-03-17       Impact factor: 11.622

2.  Collective invasion in breast cancer requires a conserved basal epithelial program.

Authors:  Kevin J Cheung; Edward Gabrielson; Zena Werb; Andrew J Ewald
Journal:  Cell       Date:  2013-12-12       Impact factor: 41.582

3.  Identifying therapeutic targets in a combined EGFR-TGFβR signalling cascade using a multiscale agent-based cancer model.

Authors:  Zhihui Wang; Veronika Bordas; Jonathan Sagotsky; Thomas S Deisboeck
Journal:  Math Med Biol       Date:  2010-12-08       Impact factor: 1.854

4.  Nonlinear modelling of cancer: bridging the gap between cells and tumours.

Authors:  J S Lowengrub; H B Frieboes; F Jin; Y-L Chuang; X Li; P Macklin; S M Wise; V Cristini
Journal:  Nonlinearity       Date:  2010

5.  Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Authors:  Silvia D M Santos; Peter J Verveer; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2007-02-18       Impact factor: 28.824

Review 6.  Multiscale cancer modeling.

Authors:  Thomas S Deisboeck; Zhihui Wang; Paul Macklin; Vittorio Cristini
Journal:  Annu Rev Biomed Eng       Date:  2011-08-15       Impact factor: 9.590

7.  Computational modeling of the immune response to tumor antigens.

Authors:  Filippo Castiglione; Federico Toschi; Massimo Bernaschi; Sauro Succi; Roberta Benedetti; Brunangelo Falini; Arcangelo Liso
Journal:  J Theor Biol       Date:  2005-07-22       Impact factor: 2.691

8.  Promotion of variant human mammary epithelial cell outgrowth by ionizing radiation: an agent-based model supported by in vitro studies.

Authors:  Rituparna Mukhopadhyay; Sylvain V Costes; Alexey V Bazarov; William C Hines; Mary Helen Barcellos-Hoff; Paul Yaswen
Journal:  Breast Cancer Res       Date:  2010-02-10       Impact factor: 6.466

9.  A hybrid cellular automaton model of clonal evolution in cancer: the emergence of the glycolytic phenotype.

Authors:  P Gerlee; A R A Anderson
Journal:  J Theor Biol       Date:  2007-11-04       Impact factor: 2.691

10.  Identification of Critical Molecular Components in a Multiscale Cancer Model Based on the Integration of Monte Carlo, Resampling, and ANOVA.

Authors:  Zhihui Wang; Veronika Bordas; Thomas S Deisboeck
Journal:  Front Physiol       Date:  2011-07-05       Impact factor: 4.566

View more
  71 in total

Review 1.  Targeting NAD+ Metabolism to Enhance Radiation Therapy Responses.

Authors:  Joshua E Lewis; Naveen Singh; Reetta J Holmila; Baran D Sumer; Noelle S Williams; Cristina M Furdui; Melissa L Kemp; David A Boothman
Journal:  Semin Radiat Oncol       Date:  2019-01       Impact factor: 5.934

2.  Evaluation of total hepatocellular cancer lifespan, including both clinically evident and preclinical development, using combined network phenotyping strategy and fisher information analysis.

Authors:  Petr Pančoška; Lubomír Skála; Jaroslav Nešetřil; Brian I Carr
Journal:  Semin Oncol       Date:  2015-01-05       Impact factor: 4.929

Review 3.  Estimation methods for heterogeneous cell population models in systems biology.

Authors:  Steffen Waldherr
Journal:  J R Soc Interface       Date:  2018-10-31       Impact factor: 4.118

4.  A mesoscopic simulator to uncover heterogeneity and evolutionary dynamics in tumors.

Authors:  Juan Jiménez-Sánchez; Álvaro Martínez-Rubio; Anton Popov; Julián Pérez-Beteta; Youness Azimzade; David Molina-García; Juan Belmonte-Beitia; Gabriel F Calvo; Víctor M Pérez-García
Journal:  PLoS Comput Biol       Date:  2021-02-10       Impact factor: 4.475

5.  Predicting breast cancer response to neoadjuvant chemotherapy based on tumor vascular features in needle biopsies.

Authors:  Terisse A Brocato; Ursa Brown-Glaberman; Zhihui Wang; Reed G Selwyn; Colin M Wilson; Edward F Wyckoff; Lesley C Lomo; Jennifer L Saline; Anupama Hooda-Nehra; Renata Pasqualini; Wadih Arap; C Jeffrey Brinker; Vittorio Cristini
Journal:  JCI Insight       Date:  2019-03-05

Review 6.  Mathematical modeling of tumor-immune cell interactions.

Authors:  Grace E Mahlbacher; Kara C Reihmer; Hermann B Frieboes
Journal:  J Theor Biol       Date:  2019-03-02       Impact factor: 2.691

Review 7.  Systems Biology of Cancer Metastasis.

Authors:  Yasir Suhail; Margo P Cain; Kiran Vanaja; Paul A Kurywchak; Andre Levchenko; Raghu Kalluri
Journal:  Cell Syst       Date:  2019-08-28       Impact factor: 10.304

8.  Modeling genotypes in their microenvironment to predict single- and multi-cellular behavior.

Authors:  Dimitrios Voukantsis; Kenneth Kahn; Martin Hadley; Rowan Wilson; Francesca M Buffa
Journal:  Gigascience       Date:  2019-03-01       Impact factor: 6.524

9.  In Situ Visualization for 3D Agent-Based Vocal Fold Inflammation and Repair Simulation.

Authors:  Nuttiiya Seekhao; Joseph JaJa; Luc Mongeau; Nicole Y K Li-Jessen
Journal:  Supercomput Front Innov       Date:  2017 Jul-Sep

10.  Nonlinear studies of tumor morphological stability using a two-fluid flow model.

Authors:  Kara Pham; Emma Turian; Kai Liu; Shuwang Li; John Lowengrub
Journal:  J Math Biol       Date:  2018-03-15       Impact factor: 2.259

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.