Literature DB >> 21572568

Discovering Molecular Targets in Cancer with Multiscale Modeling.

Zhihui Wang1, Veronika Bordas, Thomas S Deisboeck.   

Abstract

Multiscale modeling is increasingly being recognized as a promising research area in computational cancer systems biology. Here, exemplified by two pioneering studies, we attempt to explain why and how such a multiscale approach paired with an innovative cross-scale analytical technique can be useful in identifying high-value molecular therapeutic targets. This novel, integrated approach has the potential to offer a more effective in silico framework for target discovery and represents an important technical step towards systems medicine.

Entities:  

Year:  2011        PMID: 21572568      PMCID: PMC3092304          DOI: 10.1002/ddr.20401

Source DB:  PubMed          Journal:  Drug Dev Res        ISSN: 0272-4391            Impact factor:   4.360


  43 in total

Review 1.  The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems.

Authors:  Dawn C Walker; Jennifer Southgate
Journal:  Brief Bioinform       Date:  2009-03-17       Impact factor: 11.622

Review 2.  Mapping molecular networks using proteomics: a vision for patient-tailored combination therapy.

Authors:  Emanuel F Petricoin; Verena E Bichsel; Valerie S Calvert; Virginia Espina; Mary Winters; Lynn Young; Claudio Belluco; Bruce J Trock; Marc Lippman; David A Fishman; Dennis C Sgroi; Peter J Munson; Laura J Esserman; Lance A Liotta
Journal:  J Clin Oncol       Date:  2005-05-20       Impact factor: 44.544

3.  Identifying therapeutic targets in a combined EGFR-TGFβR signalling cascade using a multiscale agent-based cancer model.

Authors:  Zhihui Wang; Veronika Bordas; Jonathan Sagotsky; Thomas S Deisboeck
Journal:  Math Med Biol       Date:  2010-12-08       Impact factor: 1.854

4.  Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Authors:  Silvia D M Santos; Peter J Verveer; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2007-02-18       Impact factor: 28.824

5.  Cross-scale sensitivity analysis of a non-small cell lung cancer model: linking molecular signaling properties to cellular behavior.

Authors:  Zhihui Wang; Christina M Birch; Thomas S Deisboeck
Journal:  Biosystems       Date:  2008-03-21       Impact factor: 1.973

Review 6.  Personalized cancer therapy with selective kinase inhibitors: an emerging paradigm in medical oncology.

Authors:  Ultan McDermott; Jeff Settleman
Journal:  J Clin Oncol       Date:  2009-10-26       Impact factor: 44.544

7.  Induction of cancer cell migration by epidermal growth factor is initiated by specific phosphorylation of tyrosine 1248 of c-erbB-2 receptor via EGFR.

Authors:  Thomas Dittmar; Anja Husemann; Yvonne Schewe; Jerzy-Roch Nofer; Bernd Niggemann; Kurt S Zänker; Burkhard H Brandt
Journal:  FASEB J       Date:  2002-09-19       Impact factor: 5.191

8.  Mathematical modelling of tumour acidity.

Authors:  Kieran Smallbone; Robert A Gatenby; Philip K Maini
Journal:  J Theor Biol       Date:  2008-08-07       Impact factor: 2.691

9.  Advancing cancer systems biology: introducing the Center for the Development of a Virtual Tumor, CViT.

Authors:  Thomas S Deisboeck; Le Zhang; Sean Martin
Journal:  Cancer Inform       Date:  2007-03-30

10.  Models from experiments: combinatorial drug perturbations of cancer cells.

Authors:  Sven Nelander; Weiqing Wang; Björn Nilsson; Qing-Bai She; Christine Pratilas; Neal Rosen; Peter Gennemark; Chris Sander
Journal:  Mol Syst Biol       Date:  2008-09-02       Impact factor: 11.429

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  6 in total

1.  Network modeling of CDF treated pancreatic cancer cells reveals a novel c-myc-p73 dependent apoptotic mechanism.

Authors:  Asfar S Azmi; Shadan Ali; Sanjeev Banerjee; Bin Bao; Mai N Maitah; Subhash Padhye; Philip A Philip; Ramzi M Mohammad; Fazlul H Sarkar
Journal:  Am J Transl Res       Date:  2011-07-26       Impact factor: 4.060

Review 2.  Multiscale models of breast cancer progression.

Authors:  Anirikh Chakrabarti; Scott Verbridge; Abraham D Stroock; Claudia Fischbach; Jeffrey D Varner
Journal:  Ann Biomed Eng       Date:  2012-09-25       Impact factor: 3.934

3.  Understanding Drug Resistance in Breast Cancer with Mathematical Oncology.

Authors:  Terisse Brocato; Prashant Dogra; Eugene J Koay; Armin Day; Yao-Li Chuang; Zhihui Wang; Vittorio Cristini
Journal:  Curr Breast Cancer Rep       Date:  2014-06-01

Review 4.  Accelerating cancer systems biology research through Semantic Web technology.

Authors:  Zhihui Wang; Jonathan Sagotsky; Thomas Taylor; Patrick Shironoshita; Thomas S Deisboeck
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2012-11-27

Review 5.  Integrating Multiscale Modeling with Drug Effects for Cancer Treatment.

Authors:  Xiangfang L Li; Wasiu O Oduola; Lijun Qian; Edward R Dougherty
Journal:  Cancer Inform       Date:  2016-01-13

Review 6.  Multiscale Tumor Modeling With Drug Pharmacokinetic and Pharmacodynamic Profile Using Stochastic Hybrid System.

Authors:  Wasiu Opeyemi Oduola; Xiangfang Li
Journal:  Cancer Inform       Date:  2018-07-27
  6 in total

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