Literature DB >> 18274790

Ambidentate H-bonding by heme-bound NO: structural and spectral effects of -O versus -N H-bonding.

Changliang Xu1, G Spiro Thomas.   

Abstract

Resonance Raman studies have uncovered puzzling complexities in the structures of NO adducts of heme proteins. Although CO adducts of heme proteins obey well-behaved anti-correlations between Fe-C and C-O stretching frequencies, which reflect changes in backbonding induced by distal H-bonding residues, the corresponding NO data are scattered. This scatter can be traced to distal influences, since protein-free NO-hemes do show well-behaved anti-correlations. Why do distal effects produce irregularities in vFeN/ vNO plots but not in vFeC/vCO plots? We show via density functional theory (DFT) computations on model systems that the response to distal H-bonding differs markedly when the NO acceptor atom is N versus O. Backbonding is augmented by H-bonding to O, but the effect of H-bonding to N is to weaken both N-O and N-Fe bonds. The resulting downward deviation from the vFeN/vNO backbonding line increases with increasing H-bond strength. This effect explains the deviations observed for a series of myoglobin variants, in which the strength of distal H-bonding is modulated by distal pocket residue substitutions. Most of the data follow a positive vFeN/vNO correlation with the same slope as that calculated for H-bonding to N. Such deviations are not observed for CO adducts, because the CO pi* orbital is unoccupied, and serves as a delocalized acceptor of H-bonds. H-bonding to N primes NO-heme for reduction to the HNO adduct, a putative intermediate in NO-reducing enzymes.

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Year:  2008        PMID: 18274790      PMCID: PMC2585551          DOI: 10.1007/s00775-008-0349-8

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  33 in total

1.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

2.  Femtomolar sensitivity of a NO sensor from Clostridium botulinum.

Authors:  Pierre Nioche; Vladimir Berka; Julia Vipond; Nigel Minton; Ah-Lim Tsai; C S Raman
Journal:  Science       Date:  2004-10-07       Impact factor: 47.728

3.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

4.  Structural, electronic, and vibrational characterization of Fe-HNO porphyrinates by density functional theory.

Authors:  Douglas P Linder; Kenton R Rodgers
Journal:  Inorg Chem       Date:  2005-11-14       Impact factor: 5.165

5.  Toward modeling H-NOX domains: a DFT study of heme-NO complexes as hydrogen bond acceptors.

Authors:  Espen Tangen; Anders Svadberg; Abhik Ghosh
Journal:  Inorg Chem       Date:  2005-10-31       Impact factor: 5.165

6.  Binding of NO and CO to the d(1) Heme of cd(1) nitrite reductase from Pseudomonas aeruginosa.

Authors:  T K Das; E K Wilson; F Cutruzzolà; M Brunori; D L Rousseau
Journal:  Biochemistry       Date:  2001-09-11       Impact factor: 3.162

7.  Nitric oxide myoglobin: crystal structure and analysis of ligand geometry.

Authors:  E A Brucker; J S Olson; M Ikeda-Saito; G N Phillips
Journal:  Proteins       Date:  1998-03-01

8.  FeNO structure in distal pocket mutants of myoglobin based on resonance Raman spectroscopy.

Authors:  Candace M Coyle; Kathleen M Vogel; Thomas S Rush; Pawel M Kozlowski; Robert Williams; Thomas G Spiro; Yi Dou; Masao Ikeda-Saito; John S Olson; Marek Z Zgierski
Journal:  Biochemistry       Date:  2003-05-06       Impact factor: 3.162

9.  Crystal structures of ferrous horse heart myoglobin complexed with nitric oxide and nitrosoethane.

Authors:  Daniel M Copeland; Ann H West; George B Richter-Addo
Journal:  Proteins       Date:  2003-11-01

10.  Efficient trapping of HNO by deoxymyoglobin.

Authors:  Filip Sulc; Chad E Immoos; Dmitry Pervitsky; Patrick J Farmer
Journal:  J Am Chem Soc       Date:  2004-02-04       Impact factor: 15.419

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  14 in total

1.  New light on NO bonding in Fe(III) heme proteins from resonance Raman spectroscopy and DFT modeling.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; John S Olson; Roman S Czernuszewicz; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

Review 2.  Ambidentate H-bonding of NO and O2 in heme proteins.

Authors:  Thomas G Spiro; Alexandra V Soldatova
Journal:  J Inorg Biochem       Date:  2012-06-01       Impact factor: 4.155

3.  Oriented single-crystal nuclear resonance vibrational spectroscopy of [Fe(TPP)(MI)(NO)]: quantitative assessment of the trans effect of NO.

Authors:  Nicolai Lehnert; J Timothy Sage; Nathan Silvernail; W Robert Scheidt; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-08-02       Impact factor: 5.165

4.  Reductive activation of the heme iron-nitrosyl intermediate in the reaction mechanism of cytochrome c nitrite reductase: a theoretical study.

Authors:  Dmytro Bykov; Frank Neese
Journal:  J Biol Inorg Chem       Date:  2012-03-28       Impact factor: 3.358

5.  Accommodation of two diatomic molecules in cytochrome bo: insights into NO reductase activity in terminal oxidases.

Authors:  Takahiro Hayashi; Myat T Lin; Krithika Ganesan; Ying Chen; James A Fee; Robert B Gennis; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

6.  CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

Authors:  Thomas G Spiro; Alexandra V Soldatova; Gurusamy Balakrishnan
Journal:  Coord Chem Rev       Date:  2012-06-06       Impact factor: 22.315

Review 7.  Computational investigations of HNO in biology.

Authors:  Yong Zhang
Journal:  J Inorg Biochem       Date:  2012-10-05       Impact factor: 4.155

8.  NMR, IR/Raman, and structural properties in HNO and RNO (R = alkyl and aryl) metalloporphyrins with implication for the HNO-myoglobin complex.

Authors:  Yan Ling; Christopher Mills; Rebecca Weber; Liu Yang; Yong Zhang
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

9.  Covalent attachment of the heme to Synechococcus hemoglobin alters its reactivity toward nitric oxide.

Authors:  Matthew R Preimesberger; Eric A Johnson; Dillon B Nye; Juliette T J Lecomte
Journal:  J Inorg Biochem       Date:  2017-09-22       Impact factor: 4.155

10.  Alternative modes of O2 activation in P450 and NOS enzymes are clarified by DFT modeling and resonance Raman spectroscopy.

Authors:  Alexandra V Soldatova; Thomas G Spiro
Journal:  J Inorg Biochem       Date:  2020-03-13       Impact factor: 4.155

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