Literature DB >> 22824153

Ambidentate H-bonding of NO and O2 in heme proteins.

Thomas G Spiro1, Alexandra V Soldatova.   

Abstract

The affinity and reactivity of the gaseous molecules CO, NO and O(2) (XO) in heme protein adducts are controlled by secondary interactions, especially by H-bonds donated from distal protein residues. Vibrational spectroscopy, supported by DFT (Density Functional Theory) modeling, has revealed that for NO and O(2), but not for CO, a critical issue is whether the H-bond is donated to the outer or inner atom of the bound diatomic ligand. DFT modeling shows that bound NO and O(2) are ambidentate, both atoms separately acting as H-bond acceptors. This is not the case for CO, whose π* orbital acts as a delocalized H-bond acceptor. Vibrational spectra of heme-XO adducts reveal a general pattern of backbonding variations, marked by families of negative correlations between frequencies associated with FeX and XO bond stretches. For heme-CO adducts, H-bonding increases backbonding, the νFeX/νXO points moving up the backbonding correlation established with model compounds. For NO and O(2) adducts, however, increased backbonding is only observed when the outer atom is the H-bond acceptor. H-bonding to the inner (X) atom instead produces a positive νFeX/νXO correlation. This effect can be reproduced by DFT modeling. Its mechanism is polarization of the sp(2) orbital on the X atom, on the back side of the bent FeXO unit, drawing electrons from both the FeX and XO bonds and weakening them together. Thus, the positioning of H-bond donors in the protein differentially affects bonding and reactivity in heme adducts of NO and O(2).
Copyright © 2012 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22824153      PMCID: PMC3463650          DOI: 10.1016/j.jinorgbio.2012.05.013

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  46 in total

1.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

2.  Resonance Raman studies of dioxygen adducts of cobalt-substituted heme proteins and model compounds. Vibrationally coupled dioxygen and the issues of multiple structures and distal side hydrogen bonding.

Authors:  A Bruha; J R Kincaid
Journal:  J Am Chem Soc       Date:  1988-08-01       Impact factor: 15.419

3.  Electronic ground states and vibrational frequency shifts of diatomic ligands in heme adducts.

Authors:  Yang Liu; Huai Sun
Journal:  J Comput Chem       Date:  2010-12-15       Impact factor: 3.376

4.  An infrared study of CO binding to heart cytochrome c oxidase and hemoglobin A. Implications re O2 reactions.

Authors:  S Yoshikawa; M G Choc; M C O'Toole; W S Caughey
Journal:  J Biol Chem       Date:  1977-08-10       Impact factor: 5.157

5.  Infrared spectroscopic studies of carbonyl horseradish peroxidases.

Authors:  C H Barlow; P I Ohlsson; K G Paul
Journal:  Biochemistry       Date:  1976-05-18       Impact factor: 3.162

6.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

7.  Structural determinants in the group III truncated hemoglobin from Campylobacter jejuni.

Authors:  Marco Nardini; Alessandra Pesce; Marie Labarre; Christian Richard; Alessandro Bolli; Paolo Ascenzi; Michel Guertin; Martino Bolognesi
Journal:  J Biol Chem       Date:  2006-10-05       Impact factor: 5.157

8.  Toward modeling H-NOX domains: a DFT study of heme-NO complexes as hydrogen bond acceptors.

Authors:  Espen Tangen; Anders Svadberg; Abhik Ghosh
Journal:  Inorg Chem       Date:  2005-10-31       Impact factor: 5.165

9.  Nitric oxide myoglobin: crystal structure and analysis of ligand geometry.

Authors:  E A Brucker; J S Olson; M Ikeda-Saito; G N Phillips
Journal:  Proteins       Date:  1998-03-01

10.  Crystal structures of ferrous horse heart myoglobin complexed with nitric oxide and nitrosoethane.

Authors:  Daniel M Copeland; Ann H West; George B Richter-Addo
Journal:  Proteins       Date:  2003-11-01
View more
  5 in total

1.  Active Site Structures of CYP11A1 in the Presence of Its Physiological Substrates and Alterations upon Binding of Adrenodoxin.

Authors:  Qianhong Zhu; Piotr J Mak; Robert C Tuckey; James R Kincaid
Journal:  Biochemistry       Date:  2017-10-20       Impact factor: 3.162

2.  Electronic structure and ligand vibrations in FeNO, CoNO, and FeOO porphyrin adducts.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; Thomas G Spiro
Journal:  Inorg Chem       Date:  2013-06-13       Impact factor: 5.165

3.  Unveiling the crucial intermediates in androgen production.

Authors:  Piotr J Mak; Michael C Gregory; Ilia G Denisov; Stephen G Sligar; James R Kincaid
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

4.  Alternative modes of O2 activation in P450 and NOS enzymes are clarified by DFT modeling and resonance Raman spectroscopy.

Authors:  Alexandra V Soldatova; Thomas G Spiro
Journal:  J Inorg Biochem       Date:  2020-03-13       Impact factor: 4.155

5.  P450 CYP17A1 Variant with a Disordered Proton Shuttle Assembly Retains Peroxo-Mediated Lyase Efficiency.

Authors:  Yilin Liu; Ilia G Denisov; Yelena V Grinkova; Stephen G Sligar; James R Kincaid
Journal:  Chemistry       Date:  2020-11-09       Impact factor: 5.236

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.