Literature DB >> 23471138

CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

Thomas G Spiro1, Alexandra V Soldatova, Gurusamy Balakrishnan.   

Abstract

The gaseous XO molecules (X = C, N or O) bind to the heme prosthetic group of n class="Chemical">heme proteins, and thereby activate or inhibit key biological processes. These events depend on interactions of the surrounding protein with the FeXO adduct, interactions that can be monitored via the frequencies of the Fe-X and X-O bond stretching modes, νFeX and νXO. The frequencies can be determined by vibrational spectroscopy, especially resonance Raman spectroscopy. Backbonding, the donation of Fe dπ electrons to the XO π* orbitals, is a major bonding feature in all the FeXO adducts. Variations in backbonding produce negative νFeX/νXO correlations, which can be used to gauge electrostatic and H-bonding effects in the protein binding pocket. Backbonding correlations have been established for all the FeXO adducts, using porphyrins with electron donating and withdrawing substituents. However the adducts differ in their response to variations in the nature of the axial ligand, and to specific distal interactions. These variations provide differing vantages for evaluating the nature of protein-heme interactions. We review experimental studies that explore these variations, and DFT computational studies that illuminate the underlying physical mechanisms.

Entities:  

Keywords:  Backbonding; Carbon monoxide; DFT; Dioxygen; Heme; Infrared; Nitric oxide; Protein; Raman

Year:  2012        PMID: 23471138      PMCID: PMC3587108          DOI: 10.1016/j.ccr.2012.05.008

Source DB:  PubMed          Journal:  Coord Chem Rev        ISSN: 0010-8545            Impact factor:   22.315


  113 in total

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Journal:  J Am Chem Soc       Date:  1988-08-01       Impact factor: 15.419

2.  Electronic ground states and vibrational frequency shifts of diatomic ligands in heme adducts.

Authors:  Yang Liu; Huai Sun
Journal:  J Comput Chem       Date:  2010-12-15       Impact factor: 3.376

3.  Nitric oxide binding to nitrophorin 4 induces complete distal pocket burial.

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Journal:  Nat Struct Biol       Date:  2000-07

4.  An infrared spectroscopic study of carbon monoxide bonding to ferrous cytochrome P-450.

Authors:  D H O'Keefe; R E Ebel; J A Peterson; J C Maxwell; W S Caughey
Journal:  Biochemistry       Date:  1978-12-26       Impact factor: 3.162

5.  Toward modeling H-NOX domains: a DFT study of heme-NO complexes as hydrogen bond acceptors.

Authors:  Espen Tangen; Anders Svadberg; Abhik Ghosh
Journal:  Inorg Chem       Date:  2005-10-31       Impact factor: 5.165

Review 6.  Guanylate cyclase and the .NO/cGMP signaling pathway.

Authors:  J W Denninger; M A Marletta
Journal:  Biochim Biophys Acta       Date:  1999-05-05

7.  Heme pocket interactions in cytochrome c peroxidase studied by site-directed mutagenesis and resonance Raman spectroscopy.

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Journal:  Biochemistry       Date:  1988-07-26       Impact factor: 3.162

8.  Nitric oxide myoglobin: crystal structure and analysis of ligand geometry.

Authors:  E A Brucker; J S Olson; M Ikeda-Saito; G N Phillips
Journal:  Proteins       Date:  1998-03-01

9.  Iron porphyrins with different imidazole ligands. A theoretical comparative study.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Phys Chem A       Date:  2010-09-09       Impact factor: 2.781

10.  Electronic structure of ferric heme nitrosyl complexes with thiolate coordination.

Authors:  Florian Paulat; Nicolai Lehnert
Journal:  Inorg Chem       Date:  2007-02-08       Impact factor: 5.165

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  41 in total

1.  Isocyanide or nitrosyl complexation to hemes with varying tethered axial base ligand donors: synthesis and characterization.

Authors:  Savita K Sharma; Hyun Kim; Patrick J Rogler; Maxime A Siegler; Kenneth D Karlin
Journal:  J Biol Inorg Chem       Date:  2016-06-27       Impact factor: 3.358

2.  Nitrosative stress sensing in Porphyromonas gingivalis: structure of and heme binding by the transcriptional regulator HcpR.

Authors:  B Ross Belvin; Faik N Musayev; John Burgner; J Neel Scarsdale; Carlos R Escalante; Janina P Lewis
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-04-05       Impact factor: 7.652

Review 3.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

4.  Density functional theory study of interactions between carbon monoxide and iron tetraaza macrocyclic complexes, FeTXTAA (X = -Cl, -OH, -OCH3, -NH2, and -NO2).

Authors:  Isaias de Matos Mourão Neto; Adilson Luís Pereira Silva; Auro Atsushi Tanaka; Jaldyr de Jesus Gomes Varela
Journal:  J Mol Model       Date:  2017-02-09       Impact factor: 1.810

5.  Heme Binding by Corynebacterium diphtheriae HmuT: Function and Heme Environment.

Authors:  Elizabeth B Draganova; Neval Akbas; Seth A Adrian; Gudrun S Lukat-Rodgers; Daniel P Collins; John H Dawson; Courtni E Allen; Michael P Schmitt; Kenton R Rodgers; Dabney W Dixon
Journal:  Biochemistry       Date:  2015-10-26       Impact factor: 3.162

6.  Using resonance Raman cross-section data to estimate the spin state populations of Cytochromes P450.

Authors:  Piotr J Mak; Qianhong Zhu; James R Kincaid
Journal:  J Raman Spectrosc       Date:  2013-12-01       Impact factor: 3.133

7.  Resonance Raman spectroscopy reveals that substrate structure selectively impacts the heme-bound diatomic ligands of CYP17.

Authors:  Piotr J Mak; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

8.  Human Cytochrome CYP17A1: The Structural Basis for Compromised Lyase Activity with 17-Hydroxyprogesterone.

Authors:  Piotr J Mak; Ruchia Duggal; Ilia G Denisov; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2018-06-05       Impact factor: 15.419

9.  Spectral Characterization of a Novel NO Sensing Protein in Bacteria: NosP.

Authors:  Bezalel A Bacon; Yilin Liu; James R Kincaid; Elizabeth M Boon
Journal:  Biochemistry       Date:  2018-10-16       Impact factor: 3.162

10.  Corynebacterium diphtheriae HmuT: dissecting the roles of conserved residues in heme pocket stabilization.

Authors:  Elizabeth B Draganova; Seth A Adrian; Gudrun S Lukat-Rodgers; Cyrianne S Keutcha; Michael P Schmitt; Kenton R Rodgers; Dabney W Dixon
Journal:  J Biol Inorg Chem       Date:  2016-08-25       Impact factor: 3.358

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