Literature DB >> 20586416

Oriented single-crystal nuclear resonance vibrational spectroscopy of [Fe(TPP)(MI)(NO)]: quantitative assessment of the trans effect of NO.

Nicolai Lehnert1, J Timothy Sage, Nathan Silvernail, W Robert Scheidt, E Ercan Alp, Wolfgang Sturhahn, Jiyong Zhao.   

Abstract

This paper presents oriented n class="Chemical">single-crystal Nuclear Resonance Vibrational Spectroscopy (NRVS) data for the six-coordinate (6C) ferrous heme-nitrosyl model complex [(57)Fe(TPP)(MI)(NO)] (1; TPP(2-) = tetraphenylporphyrin dianion; MI = 1-methylimidazole). The availability of these data enables for the first time the detailed simulation of the complete NRVS data, including the porphyrin-based vibrations, of a 6C ferrous heme-nitrosyl, using our quantum chemistry centered normal coordinate analysis (QCC-NCA). Importantly, the Fe-NO stretch is split by interaction with a porphyrin-based vibration into two features, observed at 437 and 472 cm(-1). The 437 cm(-1) feature is strongly out-of-plane (oop) polarized and shows a (15)N(18)O isotope shift of 8 cm(-1) and is therefore assigned to nu(Fe-NO). The admixture of Fe-N-O bending character is small. Main contributions to the Fe-N-O bend are observed in the 520-580 cm(-1) region, distributed over a number of in-plane (ip) polarized porphyrin-based vibrations. The main component, assigned to delta(ip)(Fe-N-O), is identified with the feature at 563 cm(-1). The Fe-N-O bend also shows strong mixing with the Fe-NO stretching internal coordinate, as evidenced by the oop NRVS intensity in the 520-580 cm(-1) region. Very accurate normal mode descriptions of nu(Fe-NO) and delta(ip)(Fe-N-O) have been obtained in this study. These results contradict previous interpretations of the vibrational spectra of 6C ferrous heme-nitrosyls where the higher energy feature at approximately 550 cm(-1) had usually been associated with nu(Fe-NO). Furthermore, these results provide key insight into NO binding to ferrous heme active sites in globins and other heme proteins, in particular with respect to (a) the effect of hydrogen bonding to the coordinated NO and (b) changes in heme dynamics upon NO coordination. [Fe(TPP)(MI)(NO)] constitutes an excellent model system for ferrous NO adducts of myoglobin (Mb) mutants where the distal histidine (His64) has been removed. Comparison to the reported vibrational data for wild-type (wt) Mb-NO then shows that the effect of H bonding to the coordinated NO is weak and mostly leads to a polarization of the pi/pi* orbitals of bound NO. In addition, the observation that delta(ip)(Fe-N-O) does not correlate well with nu(N-O) can be traced back to the very mixed nature of this mode. The Fe-N(imidazole) stretching frequency is observed at 149 cm(-1) in [Fe(TPP)(MI)(NO)], and spectral changes upon NO binding to five-coordinate ferrous heme active sites are discussed. The obtained high-quality force constants for the Fe-NO and N-O bonds of 2.57 and 11.55 mdyn/A can further be compared to those of corresponding 5C species, which allows for a quantitative analysis of the sigma trans interaction between the proximal imidazole (His) ligand and NO. This is key for the activation of the NO sensor soluble guanylate cyclase. Finally, DFT methods are calibrated against the experimentally determined vibrational properties of the Fe-N-O subunit in 1. DFT is in fact incapable of reproducing the vibrational energies and normal mode descriptions of the Fe-N-O unit well, and thus, DFT-based predictions of changes in vibrational properties upon heme modification or other perturbations of these 6C complexes have to be treated with caution.

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Year:  2010        PMID: 20586416      PMCID: PMC2917100          DOI: 10.1021/ic1010677

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  66 in total

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2.  Pulling NO out of thin air.

Authors:  Thomas G Spiro
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Review 3.  Nitric oxide signaling: no longer simply on or off.

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4.  Spin density distribution in five- and six-coordinate iron(II)-porphyrin NO complexes evidenced by magnetic circular dichroism spectroscopy.

Authors:  V K K Praneeth; Frank Neese; Nicolai Lehnert
Journal:  Inorg Chem       Date:  2005-04-18       Impact factor: 5.165

5.  Resonance Raman studies of hemoglobin complexes with nitric oxide, nitrosobenzene and nitrosomethane: observation of the metal-ligand vibrations.

Authors:  G Chottard; D Mansuy
Journal:  Biochem Biophys Res Commun       Date:  1977-08-22       Impact factor: 3.575

6.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

7.  Toward modeling H-NOX domains: a DFT study of heme-NO complexes as hydrogen bond acceptors.

Authors:  Espen Tangen; Anders Svadberg; Abhik Ghosh
Journal:  Inorg Chem       Date:  2005-10-31       Impact factor: 5.165

8.  Nitric oxide myoglobin: crystal structure and analysis of ligand geometry.

Authors:  E A Brucker; J S Olson; M Ikeda-Saito; G N Phillips
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9.  Crystal structures of ferrous horse heart myoglobin complexed with nitric oxide and nitrosoethane.

Authors:  Daniel M Copeland; Ann H West; George B Richter-Addo
Journal:  Proteins       Date:  2003-11-01

Review 10.  The new chemical biology of nitrite reactions with hemoglobin: R-state catalysis, oxidative denitrosylation, and nitrite reductase/anhydrase.

Authors:  Mark T Gladwin; Rozalina Grubina; Michael P Doyle
Journal:  Acc Chem Res       Date:  2009-01-20       Impact factor: 22.384

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  18 in total

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Authors:  Takahiro Hayashi; Kyle D Miner; Natasha Yeung; Ying-Wu Lin; Yi Lu; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2011-06-14       Impact factor: 3.162

2.  New perspectives on iron-ligand vibrations of oxyheme complexes.

Authors:  Jianfeng Li; Qian Peng; Alexander Barabanschikov; Jeffrey W Pavlik; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; Charles E Schulz; J Timothy Sage; W Robert Scheidt
Journal:  Chemistry       Date:  2011-08-29       Impact factor: 5.236

3.  Spectroscopic identification of reactive porphyrin motions.

Authors:  Alexander Barabanschikov; Alexander Demidov; Minoru Kubo; Paul M Champion; J Timothy Sage; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp
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4.  Heme-protein vibrational couplings in cytochrome c provide a dynamic link that connects the heme-iron and the protein surface.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-22       Impact factor: 11.205

5.  Nuclear inelastic scattering and Mössbauer spectroscopy as local probes for ligand binding modes and electronic properties in proteins: vibrational behavior of a ferriheme center inside a β-barrel protein.

Authors:  Beate Moeser; Adam Janoschka; Juliusz A Wolny; Hauke Paulsen; Igor Filippov; Robert E Berry; Hongjun Zhang; Aleksandr I Chumakov; F Ann Walker; Volker Schünemann
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Review 6.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
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7.  Definition of the intermediates and mechanism of the anticancer drug bleomycin using nuclear resonance vibrational spectroscopy and related methods.

Authors:  Lei V Liu; Caleb B Bell; Shaun D Wong; Samuel A Wilson; Yeonju Kwak; Marina S Chow; Jiyong Zhao; Keith O Hodgson; Britt Hedman; Edward I Solomon
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8.  CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

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9.  Quantitative vibrational dynamics of the metal site in a tin porphyrin: an IR, NRVS, and DFT study.

Authors:  Bogdan M Leu; Marek Z Zgierski; Christian Bischoff; Ming Li; Michael Y Hu; Jiyong Zhao; Steve W Martin; Esen Ercan Alp; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-08-20       Impact factor: 5.165

10.  3D Motions of Iron in Six-Coordinate {FeNO}(7) Hemes by Nuclear Resonance Vibration Spectroscopy.

Authors:  Qian Peng; Jeffrey W Pavlik; Nathan J Silvernail; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Chemistry       Date:  2016-03-21       Impact factor: 5.236

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