Literature DB >> 19187032

Accommodation of two diatomic molecules in cytochrome bo: insights into NO reductase activity in terminal oxidases.

Takahiro Hayashi1, Myat T Lin, Krithika Ganesan, Ying Chen, James A Fee, Robert B Gennis, Pierre Moënne-Loccoz.   

Abstract

Bacterial heme-copper terminal oxidases react quickly with NO to form a heme-nitrosyl complex, which, in some of these enzymes, can further react with a second NO molecule to produce N(2)O. Previously, we characterized the heme a(3)-NO complex formed in cytochrome ba(3) from Thermus thermophilus and the product of its low-temperature illumination. We showed that the photolyzed NO group binds to Cu(B)(I) to form an end-on NO-Cu(B) or a side-on copper-nitrosyl complex, which is likely to represent the binding characteristics of the second NO molecule at the heme-copper active site. Here we present a comparative study with cytochrome bo(3) from Escherichia coli. Both terminal oxidases are shown to catalyze the same two-electron reduction of NO to N(2)O. The EPR and resonance Raman signatures of the heme o(3)-NO complex are comparable to those of the a(3)-NO complex. However, low-temperature FTIR experiments reveal that photolysis of the heme o(3)-NO complex does not produce a Cu(B)-nitrosyl complex, but that instead, the NO remains unbound in the active-site cavity. Additional FTIR photolysis experiments on the heme-nitrosyl complexes of these terminal oxidases, in the presence of CO, demonstrate that an [o(3)-NO.OC-Cu(B)] tertiary complex can form in bo(3) but not in ba(3). We assign these differences to a greater iron-copper distance in the reduced form of bo(3) compared to that of ba(3). Because this difference in metal-metal distance does not appear to affect the NO reductase activity, our results suggest that the coordination of the second NO to Cu(B) is not an essential step of the reaction mechanism.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19187032      PMCID: PMC2651033          DOI: 10.1021/bi801915r

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  53 in total

Review 1.  Nitric oxide in biological denitrification: Fe/Cu metalloenzyme and metal complex NO(x) redox chemistry.

Authors:  Ian M Wasser; Simon de Vries; Pierre Moënne-Loccoz; Imke Schröder; Kenneth D Karlin
Journal:  Chem Rev       Date:  2002-04       Impact factor: 60.622

2.  Identification of conformational substates involved in nitric oxide binding to ferric and ferrous myoglobin through difference Fourier transform infrared spectroscopy (FTIR).

Authors:  L M Miller; A J Pedraza; M R Chance
Journal:  Biochemistry       Date:  1997-10-07       Impact factor: 3.162

3.  An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

Authors:  Bin Liu; V Mitch Luna; Ying Chen; C David Stout; James A Fee
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

4.  Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans.

Authors:  S Iwata; C Ostermeier; B Ludwig; H Michel
Journal:  Nature       Date:  1995-08-24       Impact factor: 49.962

5.  Interaction in cytochrome c oxidase between cytochrome a3 ligated with nitric oxide and cytochrome a.

Authors:  R Mascarenhas; Y H Wei; C P Scholes; T E King
Journal:  J Biol Chem       Date:  1983-05-10       Impact factor: 5.157

6.  Detection of the His-heme Fe2+-NO species in the reduction of NO to N2O by ba3-oxidase from thermus thermophilus.

Authors:  Eftychia Pinakoulaki; Takehiro Ohta; Tewfik Soulimane; Teizo Kitagawa; Constantinos Varotsis
Journal:  J Am Chem Soc       Date:  2005-11-02       Impact factor: 15.419

7.  Gonococcal nitric oxide reductase is encoded by a single gene, norB, which is required for anaerobic growth and is induced by nitric oxide.

Authors:  T C Householder; E M Fozo; J A Cardinale; V L Clark
Journal:  Infect Immun       Date:  2000-09       Impact factor: 3.441

8.  Formation of the N-N bond from nitric oxide by a membrane-bound cytochrome bc complex of nitrate-respiring (denitrifying) Pseudomonas stutzeri.

Authors:  B Heiss; K Frunzke; W G Zumft
Journal:  J Bacteriol       Date:  1989-06       Impact factor: 3.490

9.  Cytochrome bo(3) from Escherichia coli: the binding and turnover of nitric oxide.

Authors:  Clive Butler; Elena Forte; Francesca Maria Scandurra; Marzia Arese; Alessandro Giuffré; Colin Greenwood; Paolo Sarti
Journal:  Biochem Biophys Res Commun       Date:  2002-09-06       Impact factor: 3.575

10.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

View more
  15 in total

1.  Nitric Oxide Reductase Activity in Heme-Nonheme Binuclear Engineered Myoglobins through a One-Electron Reduction Cycle.

Authors:  Sinan Sabuncu; Julian H Reed; Yi Lu; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2018-12-06       Impact factor: 15.419

2.  Spectroscopic characterization of mononitrosyl complexes in heme--nonheme diiron centers within the myoglobin scaffold (Fe(B)Mbs): relevance to denitrifying NO reductase.

Authors:  Takahiro Hayashi; Kyle D Miner; Natasha Yeung; Ying-Wu Lin; Yi Lu; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2011-06-14       Impact factor: 3.162

3.  Vibrational analysis of mononitrosyl complexes in hemerythrin and flavodiiron proteins: relevance to detoxifying NO reductase.

Authors:  Takahiro Hayashi; Jonathan D Caranto; Hirotoshi Matsumura; Donald M Kurtz; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2012-04-09       Impact factor: 15.419

4.  Crystal structure of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus.

Authors:  Yushi Matsumoto; Takehiko Tosha; Andrei V Pisliakov; Tomoya Hino; Hiroshi Sugimoto; Shingo Nagano; Yuji Sugita; Yoshitsugu Shiro
Journal:  Nat Struct Mol Biol       Date:  2012-01-22       Impact factor: 15.369

Review 5.  Kinetic studies of the reactions of O(2) and NO with reduced Thermus thermophilus ba(3) and bovine aa(3) using photolabile carriers.

Authors:  Olöf Einarsdóttir; Chie Funatogawa; Tewfik Soulimane; Istvan Szundi
Journal:  Biochim Biophys Acta       Date:  2011-12-16

6.  Copper(I)/NO(g) Reductive Coupling Producing a trans-Hyponitrite Bridged Dicopper(II) Complex: Redox Reversal Giving Copper(I)/NO(g) Disproportionation.

Authors:  Gayan B Wijeratne; Shabnam Hematian; Maxime A Siegler; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2017-09-12       Impact factor: 15.419

7.  Roles of glutamates and metal ions in a rationally designed nitric oxide reductase based on myoglobin.

Authors:  Ying-Wu Lin; Natasha Yeung; Yi-Gui Gao; Kyle D Miner; Shiliang Tian; Howard Robinson; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

Review 8.  The pathway of O₂to the active site in heme-copper oxidases.

Authors:  Olöf Einarsdóttir; William McDonald; Chie Funatogawa; Istvan Szundi; William H Woodruff; R Brian Dyer
Journal:  Biochim Biophys Acta       Date:  2014-07-03

9.  Role of copper ion in regulating ligand binding in a myoglobin-based cytochrome C oxidase model.

Authors:  Changyuan Lu; Xuan Zhao; Yi Lu; Denis L Rousseau; Syun-Ru Yeh
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

10.  Carbon monoxide and nitrogen monoxide ligand dynamics in synthetic heme and heme-copper complex systems.

Authors:  Heather R Lucas; Gerald J Meyer; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.