Literature DB >> 32217351

Alternative modes of O2 activation in P450 and NOS enzymes are clarified by DFT modeling and resonance Raman spectroscopy.

Alexandra V Soldatova1, Thomas G Spiro2.   

Abstract

The functions of heme proteins are modulated by hydrogen bonds (H-bonds) directed at the heme-bound ligands by protein residues. When the gaseous ligands CO, NO, or O2 are bound, their activity is strongly influenced by H-bonds to their atoms. These H-bonds produce characteristic changes in the vibrational frequencies of the heme adduct, which can be monitored by resonance Raman spectroscopy and interpreted with density functional theory (DFT) computations. When the protein employs a cysteinate proximal ligand, bound O2 becomes particularly reactive, the course of the reaction being controlled by H-bonding and proton delivery. In this work, DFT modeling is used to examine the effects of H-bonding to either the terminal (Ot) or proximate (Op) atom of methylthiolate-Fe(II)porphine-O2, as well as to the thiolate S atom. H-bonds to Op produce a positive linear correlation between ν(Fe - O) and ν(O - O), because they increase the sp2 character of Op, weakening both the Fe - O and O - O bonds. H-bonds to Ot produce a negative correlation, because they increase Fe backbonding, strengthening the Fe - O but weakening the O - O bond. Available experimental data accommodate well to the computed pattern. In particular, this correspondence supports the interpretation of cytochrome P450 data by Kincaid and Sligar [M. Gregory, P.J. Mak, S.G. Sligar, J.R. Kincaid, Angew. Chem. Int. Ed. 125 (2013) 5450-5453], involving steering between hydroxylation and lyase reaction channels by differential H-bonds. Similar channeling between the first and second steps of the nitric oxide synthase reaction is likely.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DFT; Heme; Nitric oxide synthase; Oxygen; P450; Raman

Mesh:

Substances:

Year:  2020        PMID: 32217351      PMCID: PMC7247924          DOI: 10.1016/j.jinorgbio.2020.111054

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  52 in total

1.  Structural and functional diversity in heme monooxygenases.

Authors:  Thomas L Poulos
Journal:  Drug Metab Dispos       Date:  2004-10-08       Impact factor: 3.922

2.  Molecular basis for hyperactivity in tryptophan 409 mutants of neuronal NO synthase.

Authors:  S Adak; Q Wang; D J Stuehr
Journal:  J Biol Chem       Date:  2000-06-09       Impact factor: 5.157

3.  Regulation of the properties of the heme-NO complexes in nitric-oxide synthase by hydrogen bonding to the proximal cysteine.

Authors:  M Couture; S Adak; D J Stuehr; D L Rousseau
Journal:  J Biol Chem       Date:  2001-07-30       Impact factor: 5.157

4.  Resonance Raman Spectroscopy and Density Functional Theory Calculations on Ferrous Porphyrin Dioxygen Adducts with Different Axial Ligands: Correlation of Ground State Wave Function and Geometric Parameters with Experimental Vibrational Frequencies.

Authors:  Asmita Singha; Pradip Kumar Das; Abhishek Dey
Journal:  Inorg Chem       Date:  2019-07-29       Impact factor: 5.165

5.  Human P450 CYP17A1: Control of Substrate Preference by Asparagine 202.

Authors:  Michael C Gregory; Piotr J Mak; Yogan Khatri; James R Kincaid; Stephen G Sligar
Journal:  Biochemistry       Date:  2018-01-24       Impact factor: 3.162

6.  Lessons on O2 and NO bonding to heme from ab initio multireference/multiconfiguration and DFT calculations.

Authors:  Sason Shaik; Hui Chen
Journal:  J Biol Inorg Chem       Date:  2011-03-04       Impact factor: 3.358

7.  Human Cytochrome CYP17A1: The Structural Basis for Compromised Lyase Activity with 17-Hydroxyprogesterone.

Authors:  Piotr J Mak; Ruchia Duggal; Ilia G Denisov; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2018-06-05       Impact factor: 15.419

8.  Electronic structure and ligand vibrations in FeNO, CoNO, and FeOO porphyrin adducts.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; Thomas G Spiro
Journal:  Inorg Chem       Date:  2013-06-13       Impact factor: 5.165

9.  Resonance Raman detection of bound dioxygen in cytochrome P-450cam.

Authors:  O Bangcharoenpaurpong; A K Rizos; P M Champion; D Jollie; S G Sligar
Journal:  J Biol Chem       Date:  1986-06-25       Impact factor: 5.157

10.  Resonance Raman spectroscopy of the oxygenated intermediates of human CYP19A1 implicates a compound i intermediate in the final lyase step.

Authors:  Piotr J Mak; Abhinav Luthra; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2014-03-25       Impact factor: 15.419

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  1 in total

1.  P450 CYP17A1 Variant with a Disordered Proton Shuttle Assembly Retains Peroxo-Mediated Lyase Efficiency.

Authors:  Yilin Liu; Ilia G Denisov; Yelena V Grinkova; Stephen G Sligar; James R Kincaid
Journal:  Chemistry       Date:  2020-11-09       Impact factor: 5.236

  1 in total

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