Literature DB >> 16270963

Structural, electronic, and vibrational characterization of Fe-HNO porphyrinates by density functional theory.

Douglas P Linder1, Kenton R Rodgers.   

Abstract

A recent report of the structural and vibrational properties of heme-bound HNO in myoglobin, MbHNO, revealed a long Fe-N(HNO) bond with the hydrogen atom bonded to the coordinated N atom. The Fe-N(H)-O moiety was reported to exhibit an unusually high Fe-N(HNO) stretching frequency relative to those of the corresponding [FeNO]6 and [FeNO]7 porphyrinates, despite the Fe-N(HNO) bond being longer than either of its Fe-N(NO) counterparts. Herein, we present results from density functional theory calculations of an active site model of MbHNO that support the previous assignment and clarify this seemingly contradictory result. The results are consistent with the experimental evidence for a ground-state Fe-N(H)-O structure having a long Fe-N(HNO) bond and a uniquely high nu(Fe)(-)(N(HNO)) frequency. This high frequency is the result of the correspondingly low reduced mass of the normal mode, which is largely attributable to significant motion of the N-bound hydrogen atom. Additionally, the calculations show the Fe-N(H)O bonding in this complex to be remarkably insensitive to whether the HNO and ImH ligand planes are parallel or perpendicular. This is attributed to insensitivities of the Fe-L(axial) characters of molecular orbitals to the relative HNO and ImH orientation in both the parallel and perpendicular conformers.

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Year:  2005        PMID: 16270963     DOI: 10.1021/ic0504745

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  8 in total

1.  HNO-Binding in Heme Proteins: Effects of Iron Oxidation State, Axial Ligand, and Protein Environment.

Authors:  Rahul L Khade; Yuwei Yang; Yelu Shi; Yong Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-31       Impact factor: 15.336

2.  DFT study of the mechanism of manganese quercetin 2,3-dioxygenase: quest for origins of enzyme unique nitroxygenase activity and regioselectivity.

Authors:  Zuzanna Wojdyła; Tomasz Borowski
Journal:  J Biol Inorg Chem       Date:  2016-05-11       Impact factor: 3.358

3.  Nitrosyl hydride (HNO) replaces dioxygen in nitroxygenase activity of manganese quercetin dioxygenase.

Authors:  Murugaeson R Kumar; Adrian Zapata; Alejandro J Ramirez; Sara K Bowen; Wilson A Francisco; Patrick J Farmer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-14       Impact factor: 11.205

4.  Over or under: hydride attack at the metal versus the coordinated nitrosyl ligand in ferric nitrosyl porphyrins.

Authors:  E G Abucayon; R L Khade; D R Powell; M J Shaw; Y Zhang; G B Richter-Addo
Journal:  Dalton Trans       Date:  2016-11-15       Impact factor: 4.390

5.  Ambidentate H-bonding by heme-bound NO: structural and spectral effects of -O versus -N H-bonding.

Authors:  Changliang Xu; G Spiro Thomas
Journal:  J Biol Inorg Chem       Date:  2008-05       Impact factor: 3.358

Review 6.  Computational investigations of HNO in biology.

Authors:  Yong Zhang
Journal:  J Inorg Biochem       Date:  2012-10-05       Impact factor: 4.155

7.  NMR, IR/Raman, and structural properties in HNO and RNO (R = alkyl and aryl) metalloporphyrins with implication for the HNO-myoglobin complex.

Authors:  Yan Ling; Christopher Mills; Rebecca Weber; Liu Yang; Yong Zhang
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

8.  Hydride Attack on a Coordinated Ferric Nitrosyl: Experimental and DFT Evidence for the Formation of a Heme Model-HNO Derivative.

Authors:  Erwin G Abucayon; Rahul L Khade; Douglas R Powell; Yong Zhang; George B Richter-Addo
Journal:  J Am Chem Soc       Date:  2015-12-23       Impact factor: 15.419

  8 in total

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