Literature DB >> 18251538

Charge asymmetries in hydration of polar solutes.

David L Mobley1, Janene R Baker, Alan E Barber, Christopher J Fennell, Ken A Dill.   

Abstract

We study the solvation of polar molecules in water. The center of water's dipole moment is offset from its steric center. In common water models, the Lennard-Jones center is closer to the negatively charged oxygen than to the positively charged hydrogens. This asymmetry of water's charge sites leads to different hydration free energies of positive versus negative ions of the same size. Here, we explore these hydration effects for some hypothetical neutral solutes, and two real solutes, with molecular dynamics simulations using several different water models. We find that, like ions, polar solutes are solvated differently in water depending on the sign of the partial charges. Solutes having a large negative charge balancing diffuse positive charges are preferentially solvated relative to those having a large positive charge balancing diffuse negative charges. Asymmetries in hydration free energies can be as large as 10 kcal/mol for neutral benzene-sized solutes. These asymmetries are mainly enthalpic, arising primarily from the first solvation shell water structure. Such effects are not readily captured by implicit solvent models, which respond symmetrically with respect to charge.

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Year:  2008        PMID: 18251538      PMCID: PMC2745216          DOI: 10.1021/jp709958f

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

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Journal:  J Chem Phys       Date:  2004-04-01       Impact factor: 3.488

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7.  Surfaces affect ion pairing.

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8.  Hydration thermodynamic properties of amino acid analogues: a systematic comparison of biomolecular force fields and water models.

Authors:  Berk Hess; Nico F A van der Vegt
Journal:  J Phys Chem B       Date:  2006-09-07       Impact factor: 2.991

9.  Comparison of charge models for fixed-charge force fields: small-molecule hydration free energies in explicit solvent.

Authors:  David L Mobley; Elise Dumont; John D Chodera; Ken A Dill
Journal:  J Phys Chem B       Date:  2007-02-10       Impact factor: 2.991

10.  Treating entropy and conformational changes in implicit solvent simulations of small molecules.

Authors:  David L Mobley; Ken A Dill; John D Chodera
Journal:  J Phys Chem B       Date:  2008-01-03       Impact factor: 2.991

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  40 in total

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4.  Rapid prediction of solvation free energy. 3. Application to the SAMPL2 challenge.

Authors:  Enrico O Purisima; Christopher R Corbeil; Traian Sulea
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5.  Predicting hydration free energies using all-atom molecular dynamics simulations and multiple starting conformations.

Authors:  Pavel V Klimovich; David L Mobley
Journal:  J Comput Aided Mol Des       Date:  2010-04-06       Impact factor: 3.686

6.  Modeling aqueous solvation with semi-explicit assembly.

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7.  DFT and MP2 investigations of L-proline and its hydrated complexes.

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8.  The influence of hydrogen bonding on partition coefficients.

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9.  Explicit ions/implicit water generalized Born model for nucleic acids.

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Journal:  J Chem Phys       Date:  2018-05-21       Impact factor: 3.488

10.  LS-VISM: A software package for analysis of biomolecular solvation.

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Journal:  J Comput Chem       Date:  2015-03-12       Impact factor: 3.376

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