Literature DB >> 28054187

The influence of hydrogen bonding on partition coefficients.

Nádia Melo Borges1, Peter W Kenny2, Carlos A Montanari1, Igor M Prokopczyk1, Jean F R Ribeiro1, Josmar R Rocha1, Geraldo Rodrigues Sartori1.   

Abstract

This Perspective explores how consideration of hydrogen bonding can be used to both predict and better understand partition coefficients. It is shown how polarity of both compounds and substructures can be estimated from measured alkane/water partition coefficients. When polarity is defined in this manner, hydrogen bond donors are typically less polar than hydrogen bond acceptors. Analysis of alkane/water partition coefficients in conjunction with molecular electrostatic potential calculations suggests that aromatic chloro substituents may be less lipophilic than is generally believed and that some of the effect of chloro-substitution stems from making the aromatic π-cloud less available to hydrogen bond donors. Relationships between polarity and calculated hydrogen bond basicity are derived for aromatic nitrogen and carbonyl oxygen. Aligned hydrogen bond acceptors appear to present special challenges for prediction of alkane/water partition coefficients and this may reflect 'frustration' of solvation resulting from overlapping hydration spheres. It is also shown how calculated hydrogen bond basicity can be used to model the effect of aromatic aza-substitution on octanol/water partition coefficients.

Entities:  

Keywords:  Alkane/water; Hydrogen bonding; Lipophilicity; LogP; Molecular design; Octanol/water; Partition coefficient; Polarity; Property-based drug design

Mesh:

Substances:

Year:  2017        PMID: 28054187     DOI: 10.1007/s10822-016-0002-5

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  66 in total

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Authors:  Derek A Jensen; Ronald K Gary
Journal:  J Chromatogr A       Date:  2015-09-09       Impact factor: 4.759

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Journal:  Angew Chem Int Ed Engl       Date:  2015-11-03       Impact factor: 15.336

4.  Hydration water dynamics near biological interfaces.

Authors:  Margaret E Johnson; Cecile Malardier-Jugroot; Rajesh K Murarka; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2009-04-02       Impact factor: 2.991

5.  High-throughput permeability pH profile and high-throughput alkane/water log P with artificial membranes.

Authors:  F Wohnsland; B Faller
Journal:  J Med Chem       Date:  2001-03-15       Impact factor: 7.446

6.  Matched molecular pair analysis: significance and the impact of experimental uncertainty.

Authors:  Christian Kramer; Julian E Fuchs; Steven Whitebread; Peter Gedeck; Klaus R Liedl
Journal:  J Med Chem       Date:  2014-04-16       Impact factor: 7.446

7.  Extended solvent-contact model approach to blind SAMPL5 prediction challenge for the distribution coefficients of drug-like molecules.

Authors:  Kee-Choo Chung; Hwangseo Park
Journal:  J Comput Aided Mol Des       Date:  2016-07-23       Impact factor: 3.686

8.  Hydrogen Bond Basicity Prediction for Medicinal Chemistry Design.

Authors:  Peter W Kenny; Carlos A Montanari; Igor M Prokopczyk; Jean F R Ribeiro; Geraldo Rodrigues Sartori
Journal:  J Med Chem       Date:  2016-02-26       Impact factor: 7.446

9.  ClogP(alk): a method for predicting alkane/water partition coefficient.

Authors:  Peter W Kenny; Carlos A Montanari; Igor M Prokopczyk
Journal:  J Comput Aided Mol Des       Date:  2013-06-05       Impact factor: 3.686

10.  Hydrogen bonding. 32. An analysis of water-octanol and water-alkane partitioning and the delta log P parameter of seiler.

Authors:  M H Abraham; H S Chadha; G S Whiting; R C Mitchell
Journal:  J Pharm Sci       Date:  1994-08       Impact factor: 3.534

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  4 in total

1.  A blind SAMPL6 challenge: insight into the octanol-water partition coefficients of drug-like molecules via a DFT approach.

Authors:  Evrim Arslan; Basak K Findik; Viktorya Aviyente
Journal:  J Comput Aided Mol Des       Date:  2020-01-14       Impact factor: 3.686

2.  Outliers in SAR and QSAR: 3. Importance of considering the role of water molecules in protein-ligand interactions and quantitative structure-activity relationship studies.

Authors:  Ki Hwan Kim
Journal:  J Comput Aided Mol Des       Date:  2021-03-13       Impact factor: 3.686

3.  Study of Photochemical Cytosine to Uracil Transition via Ultrafast Photo-Cross-Linking Using Vinylcarbazole Derivatives in Duplex DNA.

Authors:  Siddhant Sethi; Shigetaka Nakamura; Kenzo Fujimoto
Journal:  Molecules       Date:  2018-04-04       Impact factor: 4.411

4.  The nature of ligand efficiency.

Authors:  Peter W Kenny
Journal:  J Cheminform       Date:  2019-01-31       Impact factor: 5.514

  4 in total

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