Literature DB >> 21264484

DFT and MP2 investigations of L-proline and its hydrated complexes.

Xiao-Jun Li1, Zhi-Jian Zhong, Hai-Zhen Wu.   

Abstract

A theoretical study of L-proline-nH(2)O (n = 1-3) has been performed using the hybrid DFT-B3LYP and MP2 methods together with the 6-311++G(d,p) basis set. The results show that the P2 conformer is energetically favorable when forming a hydrated structure, and the hydration of the carboxyl group leads to the greatest stability. For hydrated complexes, the adiabatic and vertical singlet-triplet excitation energies tend to decrease with the addition of water molecules. The hydration energy indicates that in the hydrated complexes the order of stability is: binding site 2 > binding site 1 > binding site 3, and binding site 12 > binding site 23 > binding site 13. As water molecules are added, the stabilities of these hydrated structures gradually increase. In addition, an infrared frequency analysis indicated that there are some differences in the low-frequency range, which are mainly dominated by the O-H stretching or bending vibrations of different water molecules. All of these results should aid our understanding of molecular behavior and provide reference data for further studies of biological systems.

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Year:  2011        PMID: 21264484     DOI: 10.1007/s00894-011-0957-z

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  23 in total

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5.  Charge asymmetries in hydration of polar solutes.

Authors:  David L Mobley; Janene R Baker; Alan E Barber; Christopher J Fennell; Ken A Dill
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

6.  Impact of cis-proline analogs on peptide conformation.

Authors:  Ye Che; Garland R Marshall
Journal:  Biopolymers       Date:  2006-04-05       Impact factor: 2.505

7.  Theoretical UV circular dichroism of cyclo(L-Proline-L-Proline).

Authors:  Kristine L Carlson; Stephen L Lowe; Mark R Hoffmann; Kathryn A Thomasson
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9.  Dependence of the AmII'p proline Raman band on peptide conformation.

Authors:  Zeeshan Ahmed; Nataliya S Myshakina; Sanford A Asher
Journal:  J Phys Chem B       Date:  2009-08-13       Impact factor: 2.991

10.  Predictions of hydration free energies from all-atom molecular dynamics simulations.

Authors:  David L Mobley; Christopher I Bayly; Matthew D Cooper; Ken A Dill
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

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  2 in total

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Journal:  ACS Omega       Date:  2022-05-27

2.  Stabilization of zwitterionic versus canonical proline by water molecules.

Authors:  Gang Yang; Lijun Zhou; Yang Chen
Journal:  Springerplus       Date:  2016-01-06
  2 in total

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