Literature DB >> 16375397

Surfaces affect ion pairing.

Ilya Chorny1, Ken A Dill, Matthew P Jacobson.   

Abstract

In water, positive ions attract negative ions. That attraction can be modulated if a hydrophobic surface is present near the two ions in water. Using computer simulations with explicit and implicit water, we study how an ion embedded on a hydrophobic surface interacts with another nearby ion in water. Using hydrophobic surfaces with different curvatures, we find that the contact interaction between a positive and negative ion is strongly affected by the curvature of an adjacent surface, either stabilizing or destabilizing the ion pair. We also find that the solvent-separated ion pair (SSIP) can be made more stable than the contacting ion pair by the presence of a surface. This may account for why bridging waters are often found in protein crystal structures. We also note that implicit solvent models do not account for SSIPs. Finally, we find that there are charge asymmetries: an embedded positive charge attracting a negative ion is different than an embedded negative charge attracting a positive ion. Such asymmetries are also not predicted by implicit solvent models. These results may be useful for improving computational models of solvation in biology and chemistry.

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Year:  2005        PMID: 16375397     DOI: 10.1021/jp055043m

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  23 in total

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2.  Predicting hydration free energies of polychlorinated aromatic compounds from the SAMPL-3 data set with FiSH and LIE models.

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3.  Solvent reaction field potential inside an uncharged globular protein: a bridge between implicit and explicit solvent models?

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4.  Charge asymmetries in hydration of polar solutes.

Authors:  David L Mobley; Janene R Baker; Alan E Barber; Christopher J Fennell; Ken A Dill
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

5.  Geometric and potential driving formation and evolution of biomolecular surfaces.

Authors:  P W Bates; Zhan Chen; Yuhui Sun; Guo-Wei Wei; Shan Zhao
Journal:  J Math Biol       Date:  2008-10-22       Impact factor: 2.259

6.  Cation specific binding with protein surface charges.

Authors:  Berk Hess; Nico F A van der Vegt
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-28       Impact factor: 11.205

7.  DFT and MP2 investigations of L-proline and its hydrated complexes.

Authors:  Xiao-Jun Li; Zhi-Jian Zhong; Hai-Zhen Wu
Journal:  J Mol Model       Date:  2011-01-25       Impact factor: 1.810

8.  Simulations of a protein crystal: explicit treatment of crystallization conditions links theory and experiment in the streptavidin-biotin complex.

Authors:  David S Cerutti; Isolde Le Trong; Ronald E Stenkamp; Terry P Lybrand
Journal:  Biochemistry       Date:  2008-10-25       Impact factor: 3.162

9.  Oil/water transfer is partly driven by molecular shape, not just size.

Authors:  Christopher J Fennell; Charlie Kehoe; Ken A Dill
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

10.  Predictions of hydration free energies from all-atom molecular dynamics simulations.

Authors:  David L Mobley; Christopher I Bayly; Matthew D Cooper; Ken A Dill
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

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