Literature DB >> 20925089

Multipole electrostatics in hydration free energy calculations.

Yue Shi1, Chuanjie Wu, Jay W Ponder, Pengyu Ren.   

Abstract

Hydration free energy (HFE) is generally used for evaluating molecular solubility, which is an important property for pharmaceutical and chemical engineering processes. Accurately predicting HFE is also recognized as one fundamental capability of molecular mechanics force field. Here, we present a systematic investigation on HFE calculations with AMOEBA polarizable force field at various parameterization and simulation conditions. The HFEs of seven small organic molecules have been obtained alchemically using the Bennett Acceptance Ratio method. We have compared two approaches to derive the atomic multipoles from quantum mechanical calculations: one directly from the new distributed multipole analysis and the other involving fitting to the electrostatic potential around the molecules. Wave functions solved at the MP2 level with four basis sets (6-311G*, 6-311++G(2d,2p), cc-pVTZ, and aug-cc-pVTZ) are used to derive the atomic multipoles. HFEs from all four basis sets show a reasonable agreement with experimental data (root mean square error 0.63 kcal/mol for aug-cc-pVTZ). We conclude that aug-cc-pVTZ gives the best performance when used with AMOEBA, and 6-311++G(2d,2p) is comparable but more efficient for larger systems. The results suggest that the inclusion of diffuse basis functions is important for capturing intermolecular interactions. The effect of long-range correction to van der Waals interaction on the hydration free energies is about 0.1 kcal/mol when the cutoff is 12Å, and increases linearly with the number of atoms in the solute/ligand. In addition, we also discussed the results from a hybrid approach that combines polarizable solute with fixed-charge water in the HFE calculation.
Copyright © 2010 Wiley Periodicals, Inc.

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Year:  2010        PMID: 20925089      PMCID: PMC3073856          DOI: 10.1002/jcc.21681

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  27 in total

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  26 in total

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7.  Current status of protein force fields for molecular dynamics simulations.

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8.  Automation of AMOEBA polarizable force field parameterization for small molecules.

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Journal:  Theor Chem Acc       Date:  2012-02-26       Impact factor: 1.702

9.  Toward polarizable AMOEBA thermodynamics at fixed charge efficiency using a dual force field approach: application to organic crystals.

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10.  Limiting assumptions in molecular modeling: electrostatics.

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Journal:  J Comput Aided Mol Des       Date:  2013-01-26       Impact factor: 3.686

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