Literature DB >> 26763331

Physical limits on bacterial navigation in dynamic environments.

Andrew M Hein1, Douglas R Brumley2, Francesco Carrara2, Roman Stocker2, Simon A Levin3.   

Abstract

Many chemotactic bacteria inhabit environments in which chemicals appear as localized pulses and evolve by processes such as diffusion and mixing. We show that, in such environments, physical limits on the accuracy of temporal gradient sensing govern when and where bacteria can accurately measure the cues they use to navigate. Chemical pulses are surrounded by a predictable dynamic region, outside which bacterial cells cannot resolve gradients above noise. The outer boundary of this region initially expands in proportion to the square root of time before rapidly contracting. Our analysis also reveals how chemokinesis-the increase in swimming speed many bacteria exhibit when absolute chemical concentration exceeds a threshold-may serve to enhance chemotactic accuracy and sensitivity when the chemical landscape is dynamic. More generally, our framework provides a rigorous method for partitioning bacteria into populations that are 'near' and 'far' from chemical hotspots in complex, rapidly evolving environments such as those that dominate aquatic ecosystems.
© 2016 The Author(s).

Keywords:  chemokinesis; chemotaxis; heterogeneity; microbial ecology; navigation

Mesh:

Year:  2016        PMID: 26763331      PMCID: PMC4759791          DOI: 10.1098/rsif.2015.0844

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  28 in total

1.  Limits of sensing temporal concentration changes by single cells.

Authors:  Thierry Mora; Ned S Wingreen
Journal:  Phys Rev Lett       Date:  2010-06-14       Impact factor: 9.161

2.  Bacterial strategies for chemotaxis response.

Authors:  Antonio Celani; Massimo Vergassola
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-04       Impact factor: 11.205

3.  Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria

Authors: 
Journal:  Science       Date:  1998-12-18       Impact factor: 47.728

4.  Marine bacterial chemoresponse to a stepwise chemoattractant stimulus.

Authors:  Li Xie; Chunliang Lu; Xiao-Lun Wu
Journal:  Biophys J       Date:  2015-02-03       Impact factor: 4.033

5.  Bacterial chemotaxis in linear and nonlinear steady microfluidic gradients.

Authors:  Tanvir Ahmed; Thomas S Shimizu; Roman Stocker
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

6.  Quantitative modeling of Escherichia coli chemotactic motion in environments varying in space and time.

Authors:  Lili Jiang; Qi Ouyang; Yuhai Tu
Journal:  PLoS Comput Biol       Date:  2010-04-08       Impact factor: 4.475

7.  Fundamental limits on the suppression of molecular fluctuations.

Authors:  Ioannis Lestas; Glenn Vinnicombe; Johan Paulsson
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

8.  Logarithmic sensing in Escherichia coli bacterial chemotaxis.

Authors:  Yevgeniy V Kalinin; Lili Jiang; Yuhai Tu; Mingming Wu
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

9.  Marine bacterial organisation around point-like sources of amino acids.

Authors:  Greg M Barbara; James G Mitchell
Journal:  FEMS Microbiol Ecol       Date:  2003-02-01       Impact factor: 4.194

10.  Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches.

Authors:  Roman Stocker; Justin R Seymour; Azadeh Samadani; Dana E Hunt; Martin F Polz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-12       Impact factor: 11.205

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  11 in total

1.  Natural search algorithms as a bridge between organisms, evolution, and ecology.

Authors:  Andrew M Hein; Francesco Carrara; Douglas R Brumley; Roman Stocker; Simon A Levin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-05       Impact factor: 11.205

2.  Information limitation and the dynamics of coupled ecological systems.

Authors:  Andrew M Hein; Benjamin T Martin
Journal:  Nat Ecol Evol       Date:  2019-10-28       Impact factor: 15.460

3.  Bacteria push the limits of chemotactic precision to navigate dynamic chemical gradients.

Authors:  Douglas R Brumley; Francesco Carrara; Andrew M Hein; Yutaka Yawata; Simon A Levin; Roman Stocker
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-16       Impact factor: 11.205

4.  Host-emitted amino acid cues regulate bacterial chemokinesis to enhance colonization.

Authors:  Catherine D Robinson; Emily G Sweeney; Julia Ngo; Emily Ma; Arden Perkins; T Jarrod Smith; Nicolas L Fernandez; Christopher M Waters; S James Remington; Brendan J M Bohannan; Karen Guillemin
Journal:  Cell Host Microbe       Date:  2021-07-06       Impact factor: 31.316

5.  Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation.

Authors:  Junjiajia Long; Steven W Zucker; Thierry Emonet
Journal:  PLoS Comput Biol       Date:  2017-03-06       Impact factor: 4.475

6.  Decision making improves sperm chemotaxis in the presence of noise.

Authors:  Justus A Kromer; Steffen Märcker; Steffen Lange; Christel Baier; Benjamin M Friedrich
Journal:  PLoS Comput Biol       Date:  2018-04-19       Impact factor: 4.475

7.  Computational and experimental insights into the chemosensory navigation of Aedes aegypti mosquito larvae.

Authors:  Eleanor K Lutz; Tjinder S Grewal; Jeffrey A Riffell
Journal:  Proc Biol Sci       Date:  2019-11-20       Impact factor: 5.349

8.  Auxotrophic interactions: a stabilizing attribute of aquatic microbial communities?

Authors:  Winifred M Johnson; Harriet Alexander; Raven L Bier; Dan R Miller; Mario E Muscarella; Kathleen J Pitz; Heidi Smith
Journal:  FEMS Microbiol Ecol       Date:  2020-11-03       Impact factor: 4.194

9.  Migration and accumulation of bacteria with chemotaxis and chemokinesis.

Authors:  Theresa Jakuszeit; James Lindsey-Jones; François J Peaudecerf; Ottavio A Croze
Journal:  Eur Phys J E Soft Matter       Date:  2021-03-15       Impact factor: 1.890

Review 10.  Multiple functions of flagellar motility and chemotaxis in bacterial physiology.

Authors:  Remy Colin; Bin Ni; Leanid Laganenka; Victor Sourjik
Journal:  FEMS Microbiol Rev       Date:  2021-11-23       Impact factor: 16.408

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