Literature DB >> 20867954

Information-optimal transcriptional response to oscillatory driving.

Andrew Mugler1, Aleksandra M Walczak, Chris H Wiggins.   

Abstract

Intracellular transmission of information via chemical and transcriptional networks is thwarted by a physical limitation: The finite copy number of the constituent chemical species introduces unavoidable intrinsic noise. Here we solve for the complete probabilistic description of the intrinsically noisy response to an oscillatory driving signal. We derive and numerically verify a number of simple scaling laws. Unlike in the case of measuring a static quantity, response to an oscillatory signal can exhibit a resonant frequency which maximizes information transmission. Furthermore, we show that the optimal regulatory design is dependent on biophysical constraints (i.e., the allowed copy number and response time). The resulting phase diagram illustrates under what conditions threshold regulation outperforms linear regulation.

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Year:  2010        PMID: 20867954      PMCID: PMC3662809          DOI: 10.1103/PhysRevLett.105.058101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  14 in total

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Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

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Journal:  Phys Rev Lett       Date:  2006-08-08       Impact factor: 9.161

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6.  A stochastic spectral analysis of transcriptional regulatory cascades.

Authors:  Aleksandra M Walczak; Andrew Mugler; Chris H Wiggins
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-07       Impact factor: 11.205

7.  Information flow and optimization in transcriptional regulation.

Authors:  Gasper Tkacik; Curtis G Callan; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-21       Impact factor: 11.205

8.  Mutual information between input and output trajectories of biochemical networks.

Authors:  Filipe Tostevin; Pieter Rein ten Wolde
Journal:  Phys Rev Lett       Date:  2009-05-27       Impact factor: 9.161

9.  Spectral solutions to stochastic models of gene expression with bursts and regulation.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-10-20

Review 10.  The pedestrian watchmaker: genetic clocks from engineered oscillators.

Authors:  Natalie A Cookson; Lev S Tsimring; Jeff Hasty
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

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  3 in total

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Journal:  Phys Biol       Date:  2012-04-04       Impact factor: 2.583

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Journal:  PLoS Comput Biol       Date:  2015-10-20       Impact factor: 4.475

  3 in total

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