Literature DB >> 10479570

Pulse sequences for measurement of one-bond (15)N-(1)H coupling constants in the protein backbone.

M H Lerche1, A Meissner, F M Poulsen, O W Sørensen.   

Abstract

A set of three improved two-dimensional (2D) NMR methods for measuring one-bond (15)N-(1)H coupling constants in the protein backbone is presented. They are tailored to suit the size of the TROSY effect, i.e., the degree of interference between dipolar and chemical shift anisotropy relaxation mechanisms. The methods edit 2D spectra into two separate subspectra corresponding to the two possible spin states of the coupling partner. Cross talk between the two subspectra is a second order effect in the difference between the actual coupling constants and the one used in setting the pertinent delays of the pulse sequences. This relatively high degree of editing accuracy makes the methods useful for applications to molecules subjected to weak alignment where the one-bond coupling constants are linear combinations of a scalar J and a residual dipolar contribution containing important structural information. A demonstration of the new methods is shown for the (15)N-labeled protein chymotrypsin inhibitor 2 in a lipid bicelle mixture. Copyright 1999 Academic Press.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10479570     DOI: 10.1006/jmre.1999.1820

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  13 in total

1.  Model building of a protein-protein complexed structure using saturation transfer and residual dipolar coupling without paired intermolecular NOE.

Authors:  Tomoki Matsuda; Takahisa Ikegami; Nobuyuki Nakajima; Toshio Yamazaki; Haruki Nakamura
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

2.  Measurements of residual dipolar couplings in peptide inhibitors weakly aligned by transient binding to peptide amyloid fibrils.

Authors:  Zhongjing Chen; Bernd Reif
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

3.  MQ-HNCO-TROSY for the measurement of scalar and residual dipolar couplings in larger proteins: application to a 557-residue IgFLNa16-21.

Authors:  Sampo Mäntylahti; Outi Koskela; Pengju Jiang; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-08       Impact factor: 2.835

4.  Structure dissection of zebrafish progranulins identifies a well-folded granulin/epithelin module protein with pro-cell survival activities.

Authors:  Ping Wang; Babykumari Chitramuthu; Andrew Bateman; Hugh P J Bennett; Ping Xu; Feng Ni
Journal:  Protein Sci       Date:  2018-07-18       Impact factor: 6.725

5.  Detection of C',Calpha correlations in proteins using a new time- and sensitivity-optimal experiment.

Authors:  Donghan Lee; Beat Vögeli; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

6.  Line narrowing in spectra of proteins dissolved in a dilute liquid crystalline phase by band-selective adiabatic decoupling: application to 1HN-15N residual dipolar coupling measurements.

Authors:  C W Vander Kooi; E Kupce; E R Zuiderweg; M Pellecchia
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

7.  Quantitative conformational analysis of the core region of N-glycans using residual dipolar couplings, aqueous molecular dynamics, and steric alignment.

Authors:  A Almond; J O Duus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

8.  Measurement and interpretation of 15N-1H residual dipolar couplings in larger proteins.

Authors:  Akash Bhattacharya; Matthew Revington; Erik R P Zuiderweg
Journal:  J Magn Reson       Date:  2009-11-26       Impact factor: 2.229

9.  Using multiple quantum coherence to increase the 15N resolution in a three-dimensional TROSY HNCO experiment for accurate PRE and RDC measurements.

Authors:  Kaifeng Hu; Michaeleen Doucleff; G Marius Clore
Journal:  J Magn Reson       Date:  2009-06-27       Impact factor: 2.229

10.  Improvement of hydrogen bond geometry in protein NMR structures by residual dipolar couplings--an assessment of the interrelation of NMR restraints.

Authors:  Pernille Rose Jensen; Jacob Bock Axelsen; Mathilde Hauge Lerche; Flemming M Poulsen
Journal:  J Biomol NMR       Date:  2004-01       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.