Literature DB >> 19468838

Selective backbone labeling of proteins using 1,2-13C2-pyruvate as carbon source.

Chenyun Guo1, Chun Geng, Vitali Tugarinov.   

Abstract

A simple isotope labeling approach for selective (13)C/(15)N backbone labeling of proteins is described. Using {1,2-(13)C(2)}-pyruvate as the sole carbon source in bacterial growth media, selective incorporation of (13)C(alpha)-(13)CO spin-pairs into the backbones of protein molecules with medium-to-high levels of (13)C-enrichment is possible for a subset of 12 amino acids. The isotope labeling scheme has been tested on a pair of proteins--a 7-kDa immunoglobulin binding domain B1 of streptococcal protein G and an 82-kDa enzyme malate synthase G. A number of protein NMR applications are expected to benefit from the {1,2-(13)C(2)}-pyruvate based protein production.

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Year:  2009        PMID: 19468838     DOI: 10.1007/s10858-009-9326-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  25 in total

1.  Four-dimensional NMR spectroscopy of a 723-residue protein: chemical shift assignments and secondary structure of malate synthase g.

Authors:  Vitali Tugarinov; Ranjith Muhandiram; Ayeda Ayed; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-08-28       Impact factor: 15.419

Review 2.  Nuclear magnetic resonance spectroscopy of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Peter M Hwang; Lewis E Kay
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

3.  Complete assignment of heteronuclear protein resonances by protonless NMR spectroscopy.

Authors:  Wolfgang Bermel; Ivano Bertini; Luminita Duma; Isabella C Felli; Lyndon Emsley; Roberta Pierattelli; Paul R Vasos
Journal:  Angew Chem Int Ed Engl       Date:  2005-05-13       Impact factor: 15.336

4.  Detection of C',Calpha correlations in proteins using a new time- and sensitivity-optimal experiment.

Authors:  Donghan Lee; Beat Vögeli; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

5.  Improved labeling strategy for 13C relaxation measurements of methyl groups in proteins.

Authors:  A L Lee; J L Urbauer; A J Wand
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

6.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

7.  Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism.

Authors:  T Szyperski
Journal:  Eur J Biochem       Date:  1995-09-01

8.  Measurement of carbonyl chemical shifts of excited protein states by relaxation dispersion NMR spectroscopy: comparison between uniformly and selectively (13)C labeled samples.

Authors:  Patrik Lundström; D Flemming Hansen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

9.  Probing chemical shifts of invisible states of proteins with relaxation dispersion NMR spectroscopy: how well can we do?

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Patrik Lundström; Philipp Neudecker; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2008-02-01       Impact factor: 15.419

10.  Biosynthetic 13C labeling of aromatic side chains in proteins for NMR relaxation measurements.

Authors:  Kaare Teilum; Ulrika Brath; Patrik Lundström; Mikael Akke
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

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  7 in total

1.  CACA-TOCSY with alternate 13C-12C labeling: a 13Calpha direct detection experiment for mainchain resonance assignment, dihedral angle information, and amino acid type identification.

Authors:  Koh Takeuchi; Dominique P Frueh; Zhen-Yu J Sun; Sebastian Hiller; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-04-10       Impact factor: 2.835

2.  Labeling strategies for 13C-detected aligned-sample solid-state NMR of proteins.

Authors:  Fabian V Filipp; Neeraj Sinha; Lena Jairam; Joel Bradley; Stanley J Opella
Journal:  J Magn Reson       Date:  2009-09-02       Impact factor: 2.229

3.  Enhanced biosynthetically directed fractional carbon-13 enrichment of proteins for backbone NMR assignments.

Authors:  Broc R Wenrich; Reilly E Sonstrom; Riju A Gupta; David Rovnyak
Journal:  Protein Expr Purif       Date:  2015-08-06       Impact factor: 1.650

4.  Mixed pyruvate labeling enables backbone resonance assignment of large proteins using a single experiment.

Authors:  Scott A Robson; Koh Takeuchi; Andras Boeszoermenyi; Paul W Coote; Abhinav Dubey; Sven Hyberts; Gerhard Wagner; Haribabu Arthanari
Journal:  Nat Commun       Date:  2018-01-24       Impact factor: 14.919

Review 5.  Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists.

Authors:  Toshihiko Sugiki; Naohiro Kobayashi; Toshimichi Fujiwara
Journal:  Comput Struct Biotechnol J       Date:  2017-04-13       Impact factor: 7.271

Review 6.  Late metabolic precursors for selective aromatic residue labeling.

Authors:  Julia Schörghuber; Leonhard Geist; Gerald Platzer; Michael Feichtinger; Marilena Bisaccia; Lukas Scheibelberger; Frederik Weber; Robert Konrat; Roman J Lichtenecker
Journal:  J Biomol NMR       Date:  2018-05-28       Impact factor: 2.835

7.  Anthranilic acid, the new player in the ensemble of aromatic residue labeling precursor compounds.

Authors:  Julia Schörghuber; Leonhard Geist; Marilena Bisaccia; Frederik Weber; Robert Konrat; Roman J Lichtenecker
Journal:  J Biomol NMR       Date:  2017-08-31       Impact factor: 2.835

  7 in total

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