Literature DB >> 22038648

Speeding up direct (15)N detection: hCaN 2D NMR experiment.

Maayan Gal1, Katherine A Edmonds, Alexander G Milbradt, Koh Takeuchi, Gerhard Wagner.   

Abstract

Experiments detecting low gyromagnetic nuclei have recently been proposed to utilize the relatively slow relaxation properties of these nuclei in comparison to (1)H. Here we present a new type of (15)N direct-detection experiment. Like the previously proposed CaN experiment (Takeuchi et al. in J Biomol NMR 47:271-282, 2010), the hCaN experiment described here sequentially connects <span class="Chemical">amide (15)N resonances, but utilizes the initial high polarization and the faster recovery of the (1)H nucleus to shorten the recycling delay. This allows recording 2D (15)N-detected NMR experiments on proteins within a few hours, while still obtaining superior resolution for (13)C and (15)N, establishing sequential assignments through <span class="Chemical">prolines, and at conditions where amide protons exchange rapidly. The experiments are demonstrated on various biomolecules, including the small globular protein GB1, the 22 kDa HEAT2 domain of eIF4G, and an unstructured polypeptide fragment of NFAT1, which contains many SerPro sequence repeats.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22038648      PMCID: PMC3338130          DOI: 10.1007/s10858-011-9580-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

1.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

2.  NMR detection of protein 15N spins near paramagnetic lanthanide ions.

Authors:  Michael John; Ah Young Park; Nicholas E Dixon; Gottfried Otting
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

3.  Protonless NMR experiments for sequence-specific assignment of backbone nuclei in unfolded proteins.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Yong-Min Lee; Claudio Luchinat; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

Review 4.  Recent advances in solution NMR: fast methods and heteronuclear direct detection.

Authors:  Isabella C Felli; Bernhard Brutscher
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

5.  Alternate 13C-12C labeling for complete mainchain resonance assignments using C alpha direct-detection with applicability toward fast relaxing protein systems.

Authors:  Koh Takeuchi; Zhen-Yu J Sun; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2008-12-24       Impact factor: 15.419

6.  Perspectives in paramagnetic NMR of metalloproteins.

Authors:  Ivano Bertini; Claudio Luchinat; Giacomo Parigi; Roberta Pierattelli
Journal:  Dalton Trans       Date:  2008-03-27       Impact factor: 4.390

7.  Measurement of 15N relaxation in deuterated amide groups in proteins using direct nitrogen detection.

Authors:  Paul R Vasos; Jennifer B Hall; Rainer Kümmerle; David Fushman
Journal:  J Biomol NMR       Date:  2006-09-12       Impact factor: 2.835

8.  Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data.

Authors:  Sven G Hyberts; Koh Takeuchi; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2010-02-24       Impact factor: 15.419

9.  Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation.

Authors:  Assen Marintchev; Katherine A Edmonds; Boriana Marintcheva; Elthea Hendrickson; Monika Oberer; Chikako Suzuki; Barbara Herdy; Nahum Sonenberg; Gerhard Wagner
Journal:  Cell       Date:  2009-02-06       Impact factor: 41.582

10.  Hyperfine-shifted (13)C and (15)N NMR signals from Clostridium pasteurianum rubredoxin: extensive assignments and quantum chemical verification.

Authors:  I-Jin Lin; Bin Xia; David S King; Timothy E Machonkin; William M Westler; John L Markley
Journal:  J Am Chem Soc       Date:  2009-10-28       Impact factor: 15.419

View more
  9 in total

1.  Taking Simultaneous Snapshots of Intrinsically Disordered Proteins in Action.

Authors:  Marco Schiavina; Maria Grazia Murrali; Letizia Pontoriero; Valerio Sainati; Rainer Kümmerle; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  Biophys J       Date:  2019-05-23       Impact factor: 4.033

2.  15N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.

Authors:  Sandeep Chhabra; Patrick Fischer; Koh Takeuchi; Abhinav Dubey; Joshua J Ziarek; Andras Boeszoermenyi; Daniel Mathieu; Wolfgang Bermel; Norman E Davey; Gerhard Wagner; Haribabu Arthanari
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

3.  Evaluation of 15N-detected H-N correlation experiments on increasingly large RNAs.

Authors:  Robbin Schnieders; Christian Richter; Sven Warhaut; Vanessa de Jesus; Sara Keyhani; Elke Duchardt-Ferner; Heiko Keller; Jens Wöhnert; Lars T Kuhn; Alexander L Breeze; Wolfgang Bermel; Harald Schwalbe; Boris Fürtig
Journal:  J Biomol NMR       Date:  2017-09-06       Impact factor: 2.835

4.  (1)H, (13)C, and (15)N backbone and sidechain chemical shift assignments for the HEAT2 domain of human eIF4GI.

Authors:  Katherine A Edmonds; Gerhard Wagner
Journal:  Biomol NMR Assign       Date:  2014-06-15       Impact factor: 0.746

5.  15N-Detected TROSY NMR experiments to study large disordered proteins in high-field magnets.

Authors:  Abhinav Dubey; Thibault Viennet; Sandeep Chhabra; Koh Takeuchi; Hee-Chan Seo; Wolfgang Bermel; Dominique P Frueh; Haribabu Arthanari
Journal:  Chem Commun (Camb)       Date:  2022-08-23       Impact factor: 6.065

6.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

7.  Nitrogen-detected TROSY yields comparable sensitivity to proton-detected TROSY for non-deuterated, large proteins under physiological salt conditions.

Authors:  Koh Takeuchi; Haribabu Arthanari; Misaki Imai; Gerhard Wagner; Ichio Shimada
Journal:  J Biomol NMR       Date:  2016-01-22       Impact factor: 2.835

8.  Increasing the Chemical-Shift Dispersion of Unstructured Proteins with a Covalent Lanthanide Shift Reagent.

Authors:  Christoph Göbl; Moritz Resch; Madeleine Strickland; Christoph Hartlmüller; Martin Viertler; Nico Tjandra; Tobias Madl
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-20       Impact factor: 15.336

9.  The Neurite Outgrowth Inhibitory Nogo-A-Δ20 Region Is an Intrinsically Disordered Segment Harbouring Three Stretches with Helical Propensity.

Authors:  Viviane Zelenay; Michael E Arzt; Stefan Bibow; Martin E Schwab; Roland Riek
Journal:  PLoS One       Date:  2016-09-09       Impact factor: 3.240

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.