Literature DB >> 15731378

The first crystal structure of a macromolecular assembly under high pressure: CpMV at 330 MPa.

Eric Girard1, Richard Kahn, Mohamed Mezouar, Anne-Claire Dhaussy, Tianwei Lin, John E Johnson, Roger Fourme.   

Abstract

The structure of cubic Cowpea mosaic virus crystals, compressed at 330 MPa in a diamond anvil cell, was refined at 2.8 A from data collected using ultrashort-wavelength (0.331 A) synchrotron radiation. With respect to the structure at atmospheric pressure, order is increased with lower Debye Waller factors and a larger number of ordered water molecules. Hydrogen-bond lengths are on average shorter and the cavity volume is strongly reduced. A tentative mechanistic explanation is given for the coexistence of disordered and ordered cubic crystals in crystallization drops and for the disorder-order transition observed in disordered crystals submitted to high pressure. Based on such explanation, it can be concluded that pressure would in general improve, albeit to a variable extent, the order in macromolecular crystals.

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Year:  2005        PMID: 15731378      PMCID: PMC1305503          DOI: 10.1529/biophysj.104.058636

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

1.  Pressure-dependent changes in the structure of the melittin alpha-helix determined by NMR.

Authors:  M Iwadate; T Asakura; P V Dubovskii; H Yamada; K Akasaka; M P Williamson
Journal:  J Biomol NMR       Date:  2001-02       Impact factor: 2.835

Review 2.  High pressure simulations of biomolecules.

Authors:  Emanuele Paci
Journal:  Biochim Biophys Acta       Date:  2002-03-25

3.  Detection, delineation, measurement and display of cavities in macromolecular structures.

Authors:  G J Kleywegt; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-03-01

4.  Thermodynamic fluctuations in protein molecules.

Authors:  A Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  1976-08       Impact factor: 11.205

5.  Dynamical properties of bovine pancreatic trypsin inhibitor from a molecular dynamics simulation at 5000 atm.

Authors:  R M Brunne; W F van Gunsteren
Journal:  FEBS Lett       Date:  1993-06-01       Impact factor: 4.124

6.  Probing the contribution of internal cavities to the volume change of protein unfolding under pressure.

Authors:  K J Frye; C A Royer
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

7.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

8.  Compressibility-structure relationship of globular proteins.

Authors:  K Gekko; Y Hasegawa
Journal:  Biochemistry       Date:  1986-10-21       Impact factor: 3.162

9.  Satisfying hydrogen bonding potential in proteins.

Authors:  I K McDonald; J M Thornton
Journal:  J Mol Biol       Date:  1994-05-20       Impact factor: 5.469

10.  Opening the high-pressure domain beyond 2 kbar to protein and virus crystallography--technical advance.

Authors:  Roger Fourme; Isabella Ascone; Richard Kahn; Mohamed Mezouar; Pierre Bouvier; Eric Girard; Tianwei Lin; John E Johnson
Journal:  Structure       Date:  2002-10       Impact factor: 5.006

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  14 in total

1.  Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.

Authors:  Eric Girard; Stéphane Marchal; Javier Perez; Stéphanie Finet; Richard Kahn; Roger Fourme; Guillaume Marassio; Anne-Claire Dhaussy; Thierry Prangé; Marion Giffard; Fabienne Dulin; Françoise Bonneté; Reinhard Lange; Jacques H Abraini; Mohamed Mezouar; Nathalie Colloc'h
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Biocrystallography: past, present, future.

Authors:  Richard Giegé; Claude Sauter
Journal:  HFSP J       Date:  2010-04-22

3.  Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.

Authors:  Mohamed Jebbar; Bruno Franzetti; Eric Girard; Philippe Oger
Journal:  Extremophiles       Date:  2015-06-23       Impact factor: 2.395

4.  Reduction of lattice disorder in protein crystals by high-pressure cryocooling.

Authors:  Qingqiu Huang; Sol M Gruner; Chae Un Kim; Yuxin Mao; Xiaochun Wu; Doletha M E Szebenyi
Journal:  J Appl Crystallogr       Date:  2016-02-01       Impact factor: 3.304

5.  Structural rigidity of a large cavity-containing protein revealed by high-pressure crystallography.

Authors:  Marcus D Collins; Michael L Quillin; Gerhard Hummer; Brian W Matthews; Sol M Gruner
Journal:  J Mol Biol       Date:  2006-12-15       Impact factor: 5.469

6.  Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas.

Authors:  Adam S Olia; Sherwood Casjens; Gino Cingolani
Journal:  Protein Sci       Date:  2009-03       Impact factor: 6.725

7.  Pressure-dependent 13C chemical shifts in proteins: origins and applications.

Authors:  David J Wilton; Ryo Kitahara; Kazuyuki Akasaka; Mike P Williamson
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

8.  A new paradigm for macromolecular crystallography beamlines derived from high-pressure methodology and results.

Authors:  Roger Fourme; Eric Girard; Anne Claire Dhaussy; Kadda Medjoubi; Thierry Prangé; Isabella Ascone; Mohamed Mezouar; Richard Kahn
Journal:  J Synchrotron Radiat       Date:  2010-11-12       Impact factor: 2.616

9.  High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase.

Authors:  Takayuki Nagae; Takashi Kawamura; Leonard M G Chavas; Ken Niwa; Masashi Hasegawa; Chiaki Kato; Nobuhisa Watanabe
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-02-14

10.  Adaptation of the base-paired double-helix molecular architecture to extreme pressure.

Authors:  Eric Girard; Thierry Prangé; Anne-Claire Dhaussy; Evelyne Migianu-Griffoni; Marc Lecouvey; Jean-Claude Chervin; Mohamed Mezouar; Richard Kahn; Roger Fourme
Journal:  Nucleic Acids Res       Date:  2007-07-07       Impact factor: 16.971

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