Literature DB >> 19308328

Pressure-dependent 13C chemical shifts in proteins: origins and applications.

David J Wilton1, Ryo Kitahara, Kazuyuki Akasaka, Mike P Williamson.   

Abstract

Pressure-dependent (13)C chemical shifts have been measured for aliphatic carbons in barnase and Protein G. Up to 200 MPa (2 kbar), most shift changes are linear, demonstrating pressure-independent compressibilities. CH(3), CH(2) and CH carbon shifts change on average by +0.23, -0.09 and -0.18 ppm, respectively, due to a combination of bond shortening and changes in bond angles, the latter matching one explanation for the gamma-gauche effect. In addition, there is a residue-specific component, arising from both local compression and conformational change. To assess the relative magnitudes of these effects, residue-specific shift changes for protein G were converted into structural restraints and used to calculate the change in structure with pressure, using a genetic algorithm to convert shift changes into dihedral angle restraints. The results demonstrate that residual (13)C alpha shifts are dominated by dihedral angle changes and can be used to calculate structural change, whereas (13)C beta shifts retain significant dependence on local compression, making them less useful as structural restraints.

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Year:  2009        PMID: 19308328     DOI: 10.1007/s10858-009-9312-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  36 in total

1.  Pressure-dependent changes in the structure of the melittin alpha-helix determined by NMR.

Authors:  M Iwadate; T Asakura; P V Dubovskii; H Yamada; K Akasaka; M P Williamson
Journal:  J Biomol NMR       Date:  2001-02       Impact factor: 2.835

2.  Rapid internal dynamics of BPTI is insensitive to pressure. (15)N spin relaxation at 2 kbar.

Authors:  S Sareth; H Li; H Yamada; C K Woodward; K Akasaka
Journal:  FEBS Lett       Date:  2000-03-17       Impact factor: 4.124

3.  Effect of pressure on the tertiary structure and dynamics of folded basic pancreatic trypsin inhibitor.

Authors:  H Li; H Yamada; K Akasaka
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

4.  Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding.

Authors:  Ryo Kitahara; Kazuyuki Akasaka
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

Review 5.  Probing the pressure-temperature stability of amyloid fibrils provides new insights into their molecular properties.

Authors:  Filip Meersman; Christopher M Dobson
Journal:  Biochim Biophys Acta       Date:  2005-11-16

6.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

7.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

8.  Compressibility-structure relationship of globular proteins.

Authors:  K Gekko; Y Hasegawa
Journal:  Biochemistry       Date:  1986-10-21       Impact factor: 3.162

9.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

10.  Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR.

Authors:  T Gallagher; P Alexander; P Bryan; G L Gilliland
Journal:  Biochemistry       Date:  1994-04-19       Impact factor: 3.162

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  2 in total

1.  Pressure dependence of side chain 13C chemical shifts in model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Edson Crusca; Claudia E Munte; Masatsune Kainosho; Werner Kremer; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2017-09-14       Impact factor: 2.835

2.  Impact of hydrostatic pressure on an intrinsically disordered protein: a high-pressure NMR study of α-synuclein.

Authors:  Julien Roche; Jinfa Ying; Alexander S Maltsev; Ad Bax
Journal:  Chembiochem       Date:  2013-06-28       Impact factor: 3.164

  2 in total

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