Literature DB >> 20483346

Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.

Eric Girard1, Stéphane Marchal, Javier Perez, Stéphanie Finet, Richard Kahn, Roger Fourme, Guillaume Marassio, Anne-Claire Dhaussy, Thierry Prangé, Marion Giffard, Fabienne Dulin, Françoise Bonneté, Reinhard Lange, Jacques H Abraini, Mohamed Mezouar, Nathalie Colloc'h.   

Abstract

Structure-function relationships in the tetrameric enzyme urate oxidase were investigated using pressure perturbation. As the active sites are located at the interfaces between monomers, enzyme activity is directly related to the integrity of the tetramer. The effect of hydrostatic pressure on the enzyme was investigated by x-ray crystallography, small-angle x-ray scattering, and fluorescence spectroscopy. Enzymatic activity was also measured under pressure and after decompression. A global model, consistent with all measurements, discloses structural and functional details of the pressure-induced dissociation of the tetramer. Before dissociating, the pressurized protein adopts a conformational substate characterized by an expansion of its substrate binding pocket at the expense of a large neighboring hydrophobic cavity. This substate should be adopted by the enzyme during its catalytic mechanism, where the active site has to accommodate larger intermediates and product. The approach, combining several high-pressure techniques, offers a new (to our knowledge) means of exploring structural and functional properties of transient states relevant to protein mechanisms. Copyright 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20483346      PMCID: PMC2872268          DOI: 10.1016/j.bpj.2010.01.058

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

1.  Probing substates in sperm whale myoglobin using high-pressure crystallography.

Authors:  Paul Urayama; George N Phillips; Sol M Gruner
Journal:  Structure       Date:  2002-01       Impact factor: 5.006

2.  High-pressure protein crystallography (HPPX): instrumentation, methodology and results on lysozyme crystals.

Authors:  R Fourme; R Kahn; M Mezouar; E Girard; C Hoerentrup; T Prangé; I Ascone
Journal:  J Synchrotron Radiat       Date:  2001-08-28       Impact factor: 2.616

Review 3.  Revisiting volume changes in pressure-induced protein unfolding.

Authors:  Catherine A Royer
Journal:  Biochim Biophys Acta       Date:  2002-03-25

Review 4.  Pressure effects on intra- and intermolecular interactions within proteins.

Authors:  Boonchai B Boonyaratanakornkit; Chan Beum Park; Douglas S Clark
Journal:  Biochim Biophys Acta       Date:  2002-03-25

5.  General base catalysis in the urate oxidase reaction: evidence for a novel Thr-Lys catalytic diad.

Authors:  Rebecca D Imhoff; Nicholas P Power; M Jack Borrok; Peter A Tipton
Journal:  Biochemistry       Date:  2003-04-15       Impact factor: 3.162

6.  CASTp: Computed Atlas of Surface Topography of proteins.

Authors:  T Andrew Binkowski; Shapor Naghibzadeh; Jie Liang
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

7.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

8.  Modification of a reactive cysteine explains differences between rasburicase and Uricozyme, a natural Aspergillus flavus uricase.

Authors:  Alain Bayol; Joël Capdevielle; Pascal Malazzi; Armelle Buzy; Marie Claude Bonnet; Nathalie Colloc'h; Jean-Paul Mornon; Denis Loyaux; Pascual Ferrara
Journal:  Biotechnol Appl Biochem       Date:  2002-08       Impact factor: 2.431

9.  Free-energy linkage between folding and calcium binding in EF-hand proteins.

Authors:  Marisa C Suarez; Cristiane B Rocha; Martha M Sorenson; Jerson L Silva; Debora Foguel
Journal:  Biophys J       Date:  2008-08-08       Impact factor: 4.033

10.  Complexed and ligand-free high-resolution structures of urate oxidase (Uox) from Aspergillus flavus: a reassignment of the active-site binding mode.

Authors:  Pascal Retailleau; Nathalie Colloc'h; Denis Vivarès; Françoise Bonneté; Bertrand Castro; Mohamed El-Hajji; Jean Paul Mornon; Gérald Monard; Thierry Prangé
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25
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  13 in total

1.  Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin.

Authors:  Michael T Lerch; Joseph Horwitz; John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

2.  Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.

Authors:  Mohamed Jebbar; Bruno Franzetti; Eric Girard; Philippe Oger
Journal:  Extremophiles       Date:  2015-06-23       Impact factor: 2.395

3.  Mapping protein conformational heterogeneity under pressure with site-directed spin labeling and double electron-electron resonance.

Authors:  Michael T Lerch; Zhongyu Yang; Evan K Brooks; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-18       Impact factor: 11.205

4.  Mechanism of action of nitrogen pressure in controlling striatal dopamine level of freely moving rats is changed by recurrent exposures to nitrogen narcosis.

Authors:  Cécile Lavoute; Michel Weiss; Jean-Jacques Risso; Jean-Claude Rostain
Journal:  Neurochem Res       Date:  2011-11-30       Impact factor: 3.996

5.  Insights into folate/FAD-dependent tRNA methyltransferase mechanism: role of two highly conserved cysteines in catalysis.

Authors:  Djemel Hamdane; Manuela Argentini; David Cornu; Hannu Myllykallio; Stéphane Skouloubris; Gaston Hui-Bon-Hoa; Béatrice Golinelli-Pimpaneau
Journal:  J Biol Chem       Date:  2011-08-16       Impact factor: 5.157

6.  New methodologies at PF AR-NW12A: the implementation of high-pressure macromolecular crystallography.

Authors:  Leonard Michel Gabriel Chavas; Tadayuki Nagae; Hiroyuki Yamada; Nobuhisa Watanabe; Yusuke Yamada; Masahiko Hiraki; Naohiro Matsugaki
Journal:  J Synchrotron Radiat       Date:  2013-10-01       Impact factor: 2.616

7.  A new paradigm for macromolecular crystallography beamlines derived from high-pressure methodology and results.

Authors:  Roger Fourme; Eric Girard; Anne Claire Dhaussy; Kadda Medjoubi; Thierry Prangé; Isabella Ascone; Mohamed Mezouar; Richard Kahn
Journal:  J Synchrotron Radiat       Date:  2010-11-12       Impact factor: 2.616

8.  High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase.

Authors:  Takayuki Nagae; Takashi Kawamura; Leonard M G Chavas; Ken Niwa; Masashi Hasegawa; Chiaki Kato; Nobuhisa Watanabe
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-02-14

9.  Inhibitor and substrate binding induced stability of HIV-1 protease against sequential dissociation and unfolding revealed by high pressure spectroscopy and kinetics.

Authors:  Marek Ingr; Reinhard Lange; Věra Halabalová; Alaa Yehya; Josef Hrnčiřík; Dominique Chevalier-Lucia; Laetitia Palmade; Claire Blayo; Jan Konvalinka; Eliane Dumay
Journal:  PLoS One       Date:  2015-03-17       Impact factor: 3.240

10.  Selective pressure modulation of synaptic voltage-dependent calcium channels-involvement in HPNS mechanism.

Authors:  Ben Aviner; Gideon Gradwohl; Alice Bliznyuk; Yoram Grossman
Journal:  J Cell Mol Med       Date:  2016-06-08       Impact factor: 5.310

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