Literature DB >> 11983395

High pressure simulations of biomolecules.

Emanuele Paci1.   

Abstract

Pressure is a thermodynamic variable which is particularly suitable for exploration of the properties of biological macromolecules. For proteins, in particular, denaturation induced by pressure is different from that induced by temperature or denaturants. The response of proteins to pressure changes can provide information on properties of their native and non-native states. This review focuses on molecular dynamics studies of the effect of pressure on detailed atomic models of proteins. It also reports on other theoretical approaches, such as Monte Carlo simulations, which have been used to study simplified models. Another purpose of this review is to try to point out potential future studies that may be both interesting and feasible, with constantly increasing computing power.

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Year:  2002        PMID: 11983395     DOI: 10.1016/s0167-4838(01)00343-0

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  7 in total

1.  Adhesive-cohesive model for protein compressibility: an alternative perspective on stability.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-24       Impact factor: 11.205

2.  Pressure denaturation of staphylococcal nuclease studied by neutron small-angle scattering and molecular simulation.

Authors:  Amit Paliwal; Dilipkumar Asthagiri; Dobrin P Bossev; Michael E Paulaitis
Journal:  Biophys J       Date:  2004-09-03       Impact factor: 4.033

3.  Local Fluctuations in Solution: Theory and Applications.

Authors:  Elizabeth A Ploetz; Paul E Smith
Journal:  Adv Chem Phys       Date:  2013       Impact factor: 1.000

Review 4.  Thermodynamic and functional characteristics of deep-sea enzymes revealed by pressure effects.

Authors:  Eiji Ohmae; Yurina Miyashita; Chiaki Kato
Journal:  Extremophiles       Date:  2013-09       Impact factor: 2.395

5.  Fluctuation theory of molecular association and conformational equilibria.

Authors:  Yuanfang Jiao; Paul E Smith
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

6.  The first crystal structure of a macromolecular assembly under high pressure: CpMV at 330 MPa.

Authors:  Eric Girard; Richard Kahn; Mohamed Mezouar; Anne-Claire Dhaussy; Tianwei Lin; John E Johnson; Roger Fourme
Journal:  Biophys J       Date:  2005-02-24       Impact factor: 4.033

7.  Effects of Pressure and Temperature on the Atomic Fluctuations of Dihydrofolate Reductase from a Psychropiezophile and a Mesophile.

Authors:  Qi Huang; Jocelyn M Rodgers; Russell J Hemley; Toshiko Ichiye
Journal:  Int J Mol Sci       Date:  2019-03-22       Impact factor: 5.923

  7 in total

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