Literature DB >> 7684708

Dynamical properties of bovine pancreatic trypsin inhibitor from a molecular dynamics simulation at 5000 atm.

R M Brunne1, W F van Gunsteren.   

Abstract

Molecular dynamics simulations of bovine pancreatic trypsin inhibitor in water have been performed with coupling to pressure baths at 1 atm and at 5000 atm. The positional fluctuations of atoms in the alpha- and gamma-positions are slightly decreased at 5000 atm. The mobility of the backbone phi- and psi-angles is not affected with respect to the root mean square fluctuations and the rate of torsional angle transitions. The amplitude of libration of sidechain chi-angles remains nearly the same for both pressures, but the rate of torsional angle transitions decreases on average by 30% when increasing the hydrostatic pressure to 5000 atm.

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Year:  1993        PMID: 7684708     DOI: 10.1016/0014-5793(93)81342-w

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  9 in total

1.  Effect of pressure on the tertiary structure and dynamics of folded basic pancreatic trypsin inhibitor.

Authors:  H Li; H Yamada; K Akasaka
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

2.  A model of the pressure dependence of the enantioselectivity of Candida rugosalipase towards (+/-)-menthol.

Authors:  U H Kahlow; R D Schmid; J Pleiss
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

3.  Global motions exhibited by proteins in micro- to milliseconds simulations concur with anisotropic network model predictions.

Authors:  M Gur; E Zomot; I Bahar
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

4.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

5.  Intrinsic compressibility and volume compression in solvated proteins by molecular dynamics simulation at high pressure.

Authors:  E Paci; M Marchi
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

6.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

7.  The first crystal structure of a macromolecular assembly under high pressure: CpMV at 330 MPa.

Authors:  Eric Girard; Richard Kahn; Mohamed Mezouar; Anne-Claire Dhaussy; Tianwei Lin; John E Johnson; Roger Fourme
Journal:  Biophys J       Date:  2005-02-24       Impact factor: 4.033

8.  Pressure effect on the dynamics of an isolated alpha-helix studied by 15N-1H NMR relaxation.

Authors:  V Y Orekhov; P V Dubovskii; H Yamada; K Akasaka; A S Arseniev
Journal:  J Biomol NMR       Date:  2000-07       Impact factor: 2.835

9.  High-pressure protein crystallography of hen egg-white lysozyme.

Authors:  Hiroyuki Yamada; Takayuki Nagae; Nobuhisa Watanabe
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-26
  9 in total

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