Literature DB >> 19241380

Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas.

Adam S Olia1, Sherwood Casjens, Gino Cingolani.   

Abstract

The tail needle, gp26, is a highly stable homo-trimeric fiber found in the tail apparatus of bacteriophage P22. In the mature virion, gp26 is responsible for plugging the DNA exit channel, and likely plays an important role in penetrating the host cell envelope. In this article, we have determined the 1.98 A resolution crystal structure of gp26 bound to xenon gas. The structure led us to identify a calcium and a chloride ion intimately bound at the interior of alpha-helical core, as well as seven small cavities occupied by xenon atoms. The two ions engage in buried polar interactions with gp26 side chains that provide specificity and register to gp26 helical core, thus enhancing its stability. Conversely, the distribution of xenon accessible cavities correlates well with the flexibility of the fiber observed in solution and in the crystal structure. We suggest that small internal cavities in gp26 between the helical core and the C-terminal tip allow for flexible swinging of the latter, without affecting the overall stability of the protein. The C-terminal tip may be important in scanning the bacterial surface in search of a cell-envelope penetration site, or for recognition of a yet unidentified receptor on the surface of the host.

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Year:  2009        PMID: 19241380      PMCID: PMC2760360          DOI: 10.1002/pro.53

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  52 in total

1.  Detection, delineation, measurement and display of cavities in macromolecular structures.

Authors:  G J Kleywegt; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-03-01

2.  Molecular architecture of the prolate head of bacteriophage T4.

Authors:  Andrei Fokine; Paul R Chipman; Petr G Leiman; Vadim V Mesyanzhinov; Venigalla B Rao; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-07       Impact factor: 11.205

3.  Bacteriophage P22 tail accessory factor GP26 is a long triple-stranded coiled-coil.

Authors:  Dewan Andrews; James S Butler; Jawdat Al-Bassam; Lisa Joss; Danella A Winn-Stapley; Sherwood Casjens; Gino Cingolani
Journal:  J Biol Chem       Date:  2004-12-08       Impact factor: 5.157

4.  Protein crystallography under xenon and nitrous oxide pressure: comparison with in vivo pharmacology studies and implications for the mechanism of inhaled anesthetic action.

Authors:  Nathalie Colloc'h; Jana Sopkova-de Oliveira Santos; Pascal Retailleau; Denis Vivarès; Françoise Bonneté; Béatrice Langlois d'Estainto; Bernard Gallois; Alain Brisson; Jean-Jacques Risso; Marc Lemaire; Thierry Prangé; Jacques H Abraini
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

5.  Trimeric intermediate in the in vivo folding and subunit assembly of the tail spike endorhamnosidase of bacteriophage P22.

Authors:  D Goldenberg; J King
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

6.  Ion-pairs in proteins.

Authors:  D J Barlow; J M Thornton
Journal:  J Mol Biol       Date:  1983-08-25       Impact factor: 5.469

7.  Metal-ligand geometry relevant to proteins and in proteins: sodium and potassium.

Authors:  Marjorie M Harding
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-04-26

8.  Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection.

Authors:  Celia Plisson; Helen E White; Isabelle Auzat; Amineh Zafarani; Carlos São-José; Sophie Lhuillier; Paulo Tavares; Elena V Orlova
Journal:  EMBO J       Date:  2007-07-05       Impact factor: 11.598

9.  Three-dimensional structure of the bacteriophage P22 tail machine.

Authors:  Liang Tang; William R Marion; Gino Cingolani; Peter E Prevelige; John E Johnson
Journal:  EMBO J       Date:  2005-06-02       Impact factor: 11.598

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  17 in total

1.  Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions.

Authors:  Anshul Bhardwaj; Rajeshwer S Sankhala; Adam S Olia; Dewey Brooke; Sherwood R Casjens; Derek J Taylor; Peter E Prevelige; Gino Cingolani
Journal:  J Biol Chem       Date:  2015-11-16       Impact factor: 5.157

2.  Metals in proteins: cluster analysis studies.

Authors:  Juan A C Tamames; Maria João Ramos
Journal:  J Mol Model       Date:  2010-05-21       Impact factor: 1.810

3.  Atomic structure of bacteriophage Sf6 tail needle knob.

Authors:  Anshul Bhardwaj; Ian J Molineux; Sherwood R Casjens; Gino Cingolani
Journal:  J Biol Chem       Date:  2011-06-25       Impact factor: 5.157

4.  Exploring the atomic structure and conformational flexibility of a 320 Å long engineered viral fiber using X-ray crystallography.

Authors:  Anshul Bhardwaj; Sherwood R Casjens; Gino Cingolani
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-01-29

Review 5.  Artificial bio-nanomachines based on protein needles derived from bacteriophage T4.

Authors:  Hiroshi Inaba; Takafumi Ueno
Journal:  Biophys Rev       Date:  2017-11-16

6.  Tailspike interactions with lipopolysaccharide effect DNA ejection from phage P22 particles in vitro.

Authors:  Dorothee Andres; Christin Hanke; Ulrich Baxa; Anaït Seul; Stefanie Barbirz; Robert Seckler
Journal:  J Biol Chem       Date:  2010-09-03       Impact factor: 5.157

7.  A Structural Basis for 129 Xe Hyper-CEST Signal in TEM-1 β-Lactamase.

Authors:  Benjamin W Roose; Serge D Zemerov; Yanfei Wang; Marina A Kasimova; Vincenzo Carnevale; Ivan J Dmochowski
Journal:  Chemphyschem       Date:  2018-09-13       Impact factor: 3.102

Review 8.  Ion-dipole interactions and their functions in proteins.

Authors:  Katherine H Sippel; Florante A Quiocho
Journal:  Protein Sci       Date:  2015-05-01       Impact factor: 6.725

9.  Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22.

Authors:  Reginald McNulty; Ravi Kumar Lokareddy; Ankoor Roy; Yang Yang; Gabriel C Lander; Albert J R Heck; John E Johnson; Gino Cingolani
Journal:  J Mol Biol       Date:  2015-08-21       Impact factor: 5.469

Review 10.  Architecture of viral genome-delivery molecular machines.

Authors:  Anshul Bhardwaj; Adam S Olia; Gino Cingolani
Journal:  Curr Opin Struct Biol       Date:  2013-11-15       Impact factor: 6.809

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