Literature DB >> 15111430

Temperature derivative fluorescence spectroscopy as a tool to study dynamical changes in protein crystals.

Martin Weik1, Xavier Vernede, Antoine Royant, Dominique Bourgeois.   

Abstract

Motions through the energy landscape of proteins lead to biological function. At temperatures below a dynamical transition (150-250 K), some of these motions are arrested and the activity of some proteins ceases. Here, we introduce the technique of temperature-derivative fluorescence microspectrophotometry to investigate the dynamical behavior of single protein crystals. The observation of glass transitions in thin films of water/glycerol mixtures allowed us to demonstrate the potential of the technique. Then, protein crystals were investigated, after soaking the samples in a small amount of fluorescein. If the fluorophore resides within the crystal channels, temperature-dependent changes in solvent dynamics can be monitored. Alternatively, if the fluorophore binds to the protein, local dynamical transitions within the biomolecule can be probed directly. A clear dynamical transition was observed at 175 K in the active site of crystalline human butyrylcholinesterase. The results suggest that the dynamics of crystalline proteins is strongly dependent on solvent composition and confinement in the crystal channels. Beyond applications in the field of kinetic crystallography, the highly sensitive temperature-derivative fluorescence microspectrophotometry technique opens the way to many studies on the dynamics of biological nanosamples.

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Year:  2004        PMID: 15111430      PMCID: PMC1304182          DOI: 10.1016/S0006-3495(04)74365-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Dynamical transition of myoglobin in a crystal: comparative studies of X-ray crystallography and Mössbauer spectroscopy.

Authors:  S H Chong; Y Joti; A Kidera; N Go; A Ostermann; A Gassmann; F Parak
Journal:  Eur Biophys J       Date:  2001-09       Impact factor: 1.733

2.  Microscopic origins of entropy, heat capacity and the glass transition in proteins.

Authors:  A L Lee; A J Wand
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

3.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

4.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

5.  Glassy behavior of a protein.

Authors: 
Journal:  Phys Rev Lett       Date:  1989-04-17       Impact factor: 9.161

6.  Orientational ordering and dynamics of the hydrate and exchangeable hydrogen atoms in crystalline crambin.

Authors:  M G Usha; R J Wittebort
Journal:  J Mol Biol       Date:  1989-08-20       Impact factor: 5.469

7.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

8.  Probing the active center gorge of acetylcholinesterase by fluorophores linked to substituted cysteines.

Authors:  A E Boyd; A B Marnett; L Wong; P Taylor
Journal:  J Biol Chem       Date:  2000-07-21       Impact factor: 5.157

9.  Direct structural observation of an acyl-enzyme intermediate in the hydrolysis of an ester substrate by elastase.

Authors:  X Ding; B F Rasmussen; G A Petsko; D Ringe
Journal:  Biochemistry       Date:  1994-08-09       Impact factor: 3.162

10.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

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  11 in total

1.  Hyperquenching for protein cryocrystallography.

Authors:  Matthew Warkentin; Viatcheslav Berejnov; Naji S Husseini; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2006-12-01       Impact factor: 3.304

2.  Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-09-18

3.  A newly designed microspectrofluorometer for kinetic studies on protein crystals in combination with x-ray diffraction.

Authors:  Björn U Klink; Roger S Goody; Axel J Scheidig
Journal:  Biophys J       Date:  2006-05-12       Impact factor: 4.033

4.  Simultaneous measurements of solvent dynamics and functional kinetics in a light-activated enzyme.

Authors:  Guillaume Durin; Aude Delaunay; Claudine Darnault; Derren J Heyes; Antoine Royant; Xavier Vernede; C Neil Hunter; Martin Weik; Dominique Bourgeois
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

5.  Cryocrystallography in capillaries: critical glycerol concentrations and cooling rates.

Authors:  Matthew Warkentin; Valentina Stanislavskaia; Katherine Hammes; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2008-07-01       Impact factor: 3.304

6.  Slow cooling of protein crystals.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2009-08-01       Impact factor: 3.304

7.  Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-08-09

8.  Temperature-dependent radiation sensitivity and order of 70S ribosome crystals.

Authors:  Matthew Warkentin; Jesse B Hopkins; Jonah B Haber; Gregor Blaha; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-10-23

9.  Spatial distribution of radiation damage to crystalline proteins at 25-300 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse B Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-08-18

10.  Colouring cryo-cooled crystals: online microspectrophotometry.

Authors:  John McGeehan; Raimond B G Ravelli; James W Murray; Robin Leslie Owen; Florent Cipriani; Sean McSweeney; Martin Weik; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

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