Literature DB >> 19529833

Cryocrystallography in capillaries: critical glycerol concentrations and cooling rates.

Matthew Warkentin, Valentina Stanislavskaia, Katherine Hammes, Robert E Thorne.   

Abstract

Capillary tubes have many advantages over multi-well plates for macromol-ecular crystal growth and handling, including the possibility of in situ structure determination. To obtain complete high-resolution X-ray data sets, cryopreservation protocols must be developed to prevent crystalline ice formation and preserve macromolecular crystal order. The minimum glycerol concentrations required to vitrify aqueous solutions during plunging into liquid nitrogen and liquid propane have been determined for capillary diameters from 3.3 mm to 150 microm. For the smallest diameter, the required glycerol concentrations are 30%(w/v) in nitrogen and 20%(w/v) in propane, corresponding to cooling rates of approximately 800 and approximately 7000 K s(-1), respectively. These concentrations are much larger than are required in current best practice using crystals in loops or on microfabricated mounts. In additon, the relation between the minimum cooling rate for vitrification and glycerol concentration has been estimated; this relation is of fundamental importance in developing rational cryopreservation protocols.

Entities:  

Year:  2008        PMID: 19529833      PMCID: PMC2648606          DOI: 10.1107/S0021889808018451

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  22 in total

1.  ACAPELLA-1K, a capillary-based submicroliter automated fluid handling system for genome analysis.

Authors:  D R Meldrum; H T Evensen; W H Pence; S E Moody; D L Cunningham; P J Wiktor
Journal:  Genome Res       Date:  2000-01       Impact factor: 9.043

Review 2.  Non-equilibrium freezing behaviour of aqueous systems.

Authors:  A P MacKenzie
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1977-03-29       Impact factor: 6.237

Review 3.  Protein crystallization by capillary counterdiffusion for applied crystallographic structure determination.

Authors:  Joseph D Ng; José A Gavira; Juan M García-Ruíz
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

4.  On the growth of the ice phase in aqueous colloids.

Authors:  B J LUYET
Journal:  Proc R Soc Lond B Biol Sci       Date:  1957-12-17

5.  A droplet-based, composite PDMS/glass capillary microfluidic system for evaluating protein crystallization conditions by microbatch and vapor-diffusion methods with on-chip X-ray diffraction.

Authors:  Bo Zheng; Joshua D Tice; L Spencer Roach; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2004-05-03       Impact factor: 15.336

6.  Temperature derivative fluorescence spectroscopy as a tool to study dynamical changes in protein crystals.

Authors:  Martin Weik; Xavier Vernede; Antoine Royant; Dominique Bourgeois
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

7.  Hyperquenching for protein cryocrystallography.

Authors:  Matthew Warkentin; Viatcheslav Berejnov; Naji S Husseini; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2006-12-01       Impact factor: 3.304

8.  Screening of protein crystallization conditions on a microfluidic chip using nanoliter-size droplets.

Authors:  Bo Zheng; L Spencer Roach; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

9.  Validation of convection-limited cooling of samples for freeze-fracture electron microscopy.

Authors:  S M Bailey; J A Zasadzinski
Journal:  J Microsc       Date:  1991-09       Impact factor: 1.758

10.  Ab initio crystallographic structure determination of insulin from protein to electron density without crystal handling.

Authors:  José A Gavira; Diana Toh; Javier Lopéz-Jaramillo; Juan M García-Ruíz; Joseph D Ng
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-06-20
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  12 in total

1.  Effect of common cryoprotectants on critical warming rates and ice formation in aqueous solutions.

Authors:  Jesse B Hopkins; Ryan Badeau; Matthew Warkentin; Robert E Thorne
Journal:  Cryobiology       Date:  2012-06-19       Impact factor: 2.487

2.  Slow cooling of protein crystals.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2009-08-01       Impact factor: 3.304

3.  Breaking the radiation damage limit with Cryo-SAXS.

Authors:  Steve P Meisburger; Matthew Warkentin; Huimin Chen; Jesse B Hopkins; Richard E Gillilan; Lois Pollack; Robert E Thorne
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

4.  Crystalline ice as a cryoprotectant: theoretical calculation of cooling speed in capillary tubes.

Authors:  S Yakovlev; K H Downing
Journal:  J Microsc       Date:  2011-04-28       Impact factor: 1.758

5.  Slow cooling and temperature-controlled protein crystallography.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Struct Funct Genomics       Date:  2009-12-10

Review 6.  Practical macromolecular cryocrystallography.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-27       Impact factor: 1.056

7.  Crystal Dehydration in Membrane Protein Crystallography.

Authors:  Juan Sanchez-Weatherby; Isabel Moraes
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

8.  Improved reproducibility of unit-cell parameters in macromolecular cryocrystallography by limiting dehydration during crystal mounting.

Authors:  Christopher Farley; Geoffry Burks; Thomas Siegert; Douglas H Juers
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-07-25

9.  Density and electron density of aqueous cryoprotectant solutions at cryogenic temperatures for optimized cryoprotection and diffraction contrast.

Authors:  Timothy J Tyree; Ritwik Dan; Robert E Thorne
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-27       Impact factor: 7.652

10.  A standardized technique for high-pressure cooling of protein crystals.

Authors:  David Quirnheim Pais; Barbara Rathmann; Juergen Koepke; Cveta Tomova; Paul Wurzinger; Yvonne Thielmann
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-11-22       Impact factor: 7.652

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