Literature DB >> 16698776

A newly designed microspectrofluorometer for kinetic studies on protein crystals in combination with x-ray diffraction.

Björn U Klink1, Roger S Goody, Axel J Scheidig.   

Abstract

We present a new design for a fluorescence microspectrophotometer for use in kinetic crystallography in combination with x-ray diffraction experiments. The FLUMIX device (Fluorescence spectroscopy to monitor intermediates in x-ray crystallography) is built for 0 degrees fluorescence detection, which has several advantages in comparison to a conventional fluorometer with 90 degrees design. Due to the reduced spatial requirements and the need for only one objective, the system is highly versatile, easy to handle, and can be used for many different applications. In combination with a conventional stereomicroscope, fluorescence measurements or reaction initiation can be performed directly in a hanging drop crystallization setup. The FLUMIX device can be combined with most x-ray sources, normally without the need of a specialized mechanical support. As a biological model system, we have used H-Ras p21 with an artificially introduced photo-labile GTP precursor (caged GTP) and a covalently attached fluorophore (IANBD amide). Using the FLUMIX system, detailed information about the state of photolyzed crystals of the modified H-Ras p21 (p21(mod)) could be obtained. Measurements in combination with a synchrotron beamline showed significant fluorescence changes in p21(mod) crystals even within a few seconds of x-ray exposure at 100 K.

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Year:  2006        PMID: 16698776      PMCID: PMC1563776          DOI: 10.1529/biophysj.105.078931

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  A molecular movie at 1.8 A resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds.

Authors:  Z Ren; B Perman; V Srajer; T Y Teng; C Pradervand; D Bourgeois; F Schotte; T Ursby; R Kort; M Wulff; K Moffat
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

3.  Cryophotolysis of caged compounds: a technique for trapping intermediate states in protein crystals.

Authors:  Thomas Ursby; Martin Weik; Emanuela Fioravanti; Marc Delarue; Maurice Goeldner; Dominique Bourgeois
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-03-22

4.  Crystallographic studies on p21(H-ras) using the synchrotron Laue method: improvement of crystal quality and monitoring of the GTPase reaction at different time points.

Authors:  A J Scheidig; A Sanchez-Llorente; A Lautwein; E F Pai; J E Corrie; G P Reid; A Wittinghofer; R S Goody
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

5.  Crystallization and preliminary X-ray analysis of the human c-H-ras-oncogene product p21 complexed with GTP analogues.

Authors:  A Scherer; J John; R Linke; R S Goody; A Wittinghofer; E F Pai; K C Homes
Journal:  J Mol Biol       Date:  1989-03-05       Impact factor: 5.469

6.  Use of caged nucleotides to characterize unstable intermediates by X-ray crystallography.

Authors:  A J Scheidig; C Burmester; R S Goody
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

Review 7.  New results using Laue diffraction and time-resolved crystallography.

Authors:  B L Stoddard
Journal:  Curr Opin Struct Biol       Date:  1998-10       Impact factor: 6.809

8.  Front-face fluorometry of liquid samples.

Authors:  J Eisinger; J Flores
Journal:  Anal Biochem       Date:  1979-04-01       Impact factor: 3.365

9.  The pre-hydrolysis state of p21(ras) in complex with GTP: new insights into the role of water molecules in the GTP hydrolysis reaction of ras-like proteins.

Authors:  A J Scheidig; C Burmester; R S Goody
Journal:  Structure       Date:  1999-11-15       Impact factor: 5.006

Review 10.  How does the switch II region of G-domains work?

Authors:  P F Stouten; C Sander; A Wittinghofer; A Valencia
Journal:  FEBS Lett       Date:  1993-03-29       Impact factor: 4.124

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  13 in total

Review 1.  Synergy within structural biology of single crystal optical spectroscopy and X-ray crystallography.

Authors:  Teresa De la Mora-Rey; Carrie M Wilmot
Journal:  Curr Opin Struct Biol       Date:  2007-10-23       Impact factor: 6.809

2.  Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.

Authors:  Buz Barstow; Nozomi Ando; Chae Un Kim; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-03       Impact factor: 11.205

3.  Germline KRAS mutations cause aberrant biochemical and physical properties leading to developmental disorders.

Authors:  Lothar Gremer; Torsten Merbitz-Zahradnik; Radovan Dvorsky; Ion C Cirstea; Christian Peter Kratz; Martin Zenker; Alfred Wittinghofer; Mohammad Reza Ahmadian
Journal:  Hum Mutat       Date:  2010-12-09       Impact factor: 4.878

4.  Structures of a human blood group glycosyltransferase in complex with a photo-activatable UDP-Gal derivative reveal two different binding conformations.

Authors:  René Jørgensen; Gaëlle Batot; Karin Mannerstedt; Anne Imberty; Christelle Breton; Ole Hindsgaul; Antoine Royant; Monica M Palcic
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

5.  New insight into the dynamic properties and the active site architecture of H-Ras p21 revealed by X-ray crystallography at very high resolution.

Authors:  Björn U Klink; Axel J Scheidig
Journal:  BMC Struct Biol       Date:  2010-10-25

6.  In crystallo optical spectroscopy (icOS) as a complementary tool on the macromolecular crystallography beamlines of the ESRF.

Authors:  David von Stetten; Thierry Giraud; Philippe Carpentier; Franc Sever; Maxime Terrien; Fabien Dobias; Douglas H Juers; David Flot; Christoph Mueller-Dieckmann; Gordon A Leonard; Daniele de Sanctis; Antoine Royant
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

7.  A new on-axis multimode spectrometer for the macromolecular crystallography beamlines of the Swiss Light Source.

Authors:  Robin L Owen; Arwen R Pearson; Alke Meents; Pirmin Boehler; Vincent Thominet; Clemens Schulze-Briese
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

8.  Mapping the nucleotide and isoform-dependent structural and dynamical features of Ras proteins.

Authors:  Alemayehu A Gorfe; Barry J Grant; J Andrew McCammon
Journal:  Structure       Date:  2008-06       Impact factor: 5.006

9.  Colouring cryo-cooled crystals: online microspectrophotometry.

Authors:  John McGeehan; Raimond B G Ravelli; James W Murray; Robin Leslie Owen; Florent Cipriani; Sean McSweeney; Martin Weik; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

10.  (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA-Catalyzed GTP Hydrolysis.

Authors:  Yi Jin; Robert W Molt; Jonathan P Waltho; Nigel G J Richards; G Michael Blackburn
Journal:  Angew Chem Int Ed Engl       Date:  2016-01-28       Impact factor: 15.336

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