Literature DB >> 19254549

Simultaneous measurements of solvent dynamics and functional kinetics in a light-activated enzyme.

Guillaume Durin1, Aude Delaunay, Claudine Darnault, Derren J Heyes, Antoine Royant, Xavier Vernede, C Neil Hunter, Martin Weik, Dominique Bourgeois.   

Abstract

Solvent fluctuations play a key role in controlling protein motions and biological function. Here, we have studied how individual steps of the reaction catalyzed by the light-activated enzyme protochlorophyllide oxidoreductase (POR) couple with solvent dynamics. To simultaneously monitor the catalytic cycle of the enzyme and the dynamical behavior of the solvent, we designed temperature-dependent UV-visible microspectrophotometry experiments, using flash-cooled nanodroplets of POR to which an exogenous soluble fluorophore was added. The formation and decay of the first two intermediates in the POR-catalyzed reaction were measured, together with the solvent glass transition and the buildup of crystalline ice at cryogenic temperatures. We find that formation of the first intermediate occurs below the glass transition temperature (T(g)), and is not affected by changes in solvent dynamics induced by modifying the glycerol content. In contrast, formation of the second intermediate occurs above T(g) and is influenced by changes in glycerol concentration in a manner remarkably similar to the buildup of crystalline ice. These results suggest that internal, nonslaved protein motions drive the first step of the POR-catalyzed reaction whereas solvent-slaved motions control the second step. We propose that the concept of solvent slaving applies to complex enzymes such as POR.

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Year:  2009        PMID: 19254549      PMCID: PMC2717306          DOI: 10.1016/j.bpj.2008.10.065

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

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2.  Enzyme activity down to -100 degrees C.

Authors:  J M Bragger; R V Dunn; R M Daniel
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3.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

4.  The mechanism of rate-limiting motions in enzyme function.

Authors:  Eric D Watt; Hiroko Shimada; Evgenii L Kovrigin; J Patrick Loria
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-05       Impact factor: 11.205

5.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

6.  Enzyme activity below the dynamical transition at 220 K.

Authors:  R M Daniel; J C Smith; M Ferrand; S Héry; R Dunn; J L Finney
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

Review 7.  Making light work of enzyme catalysis: protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; C Neil Hunter
Journal:  Trends Biochem Sci       Date:  2005-09-21       Impact factor: 13.807

8.  Conformational relaxation and ligand binding in myoglobin.

Authors:  A Ansari; C M Jones; E R Henry; J Hofrichter; W A Eaton
Journal:  Biochemistry       Date:  1994-05-03       Impact factor: 3.162

9.  The charge-transfer complex between protochlorophyllide and NADPH: an intermediate in protochlorophyllide photoreduction.

Authors:  Victor I Raskin; Amnon Schwartz
Journal:  Photosynth Res       Date:  2002       Impact factor: 3.573

10.  Identification and characterization of the product release steps within the catalytic cycle of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; C Neil Hunter
Journal:  Biochemistry       Date:  2004-06-29       Impact factor: 3.162

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  11 in total

Review 1.  Photocatalysis as the 'master switch' of photomorphogenesis in early plant development.

Authors:  Derren J Heyes; Shaowei Zhang; Aoife Taylor; Linus O Johannissen; Samantha J O Hardman; Sam Hay; Nigel S Scrutton
Journal:  Nat Plants       Date:  2021-03-08       Impact factor: 15.793

2.  Correlated structural kinetics and retarded solvent dynamics at the metalloprotease active site.

Authors:  Moran Grossman; Benjamin Born; Matthias Heyden; Dmitry Tworowski; Gregg B Fields; Irit Sagi; Martina Havenith
Journal:  Nat Struct Mol Biol       Date:  2011-09-18       Impact factor: 15.369

3.  A twin-track approach has optimized proton and hydride transfer by dynamically coupled tunneling during the evolution of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Colin Levy; Michiyo Sakuma; David L Robertson; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2011-02-11       Impact factor: 5.157

4.  The role of structured water in mediating general anesthetic action on alpha4beta2 nAChR.

Authors:  Dan Willenbring; Yan Xu; Pei Tang
Journal:  Phys Chem Chem Phys       Date:  2010-07-27       Impact factor: 3.676

5.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Mutagenesis alters the catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Binuraj R K Menon; Paul A Davison; C Neil Hunter; Nigel S Scrutton; Derren J Heyes
Journal:  J Biol Chem       Date:  2009-10-22       Impact factor: 5.157

7.  Mechanistic reappraisal of early stage photochemistry in the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Samantha J O Hardman; David Mansell; John M Gardiner; Nigel S Scrutton
Journal:  PLoS One       Date:  2012-09-26       Impact factor: 3.240

8.  Ultrafast red light activation of Synechocystis phytochrome Cph1 triggers major structural change to form the Pfr signalling-competent state.

Authors:  Derren J Heyes; Basile Khara; Michiyo Sakuma; Samantha J O Hardman; Ronan O'Cualain; Stephen E J Rigby; Nigel S Scrutton
Journal:  PLoS One       Date:  2012-12-26       Impact factor: 3.240

9.  Excited-state charge separation in the photochemical mechanism of the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Samantha J O Hardman; Tobias M Hedison; Robin Hoeven; Greg M Greetham; Michael Towrie; Nigel S Scrutton
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-08       Impact factor: 15.336

10.  The photoinitiated reaction pathway of full-length cyanobacteriochrome Tlr0924 monitored over 12 orders of magnitude.

Authors:  Anna F E Hauck; Samantha J O Hardman; Roger J Kutta; Gregory M Greetham; Derren J Heyes; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2014-05-09       Impact factor: 5.157

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