Literature DB >> 12444262

Slaving: solvent fluctuations dominate protein dynamics and functions.

P W Fenimore1, H Frauenfelder, B H McMahon, F G Parak.   

Abstract

Protein motions are essential for function. Comparing protein processes with the dielectric fluctuations of the surrounding solvent shows that they fall into two classes: nonslaved and slaved. Nonslaved processes are independent of the solvent motions; their rates are determined by the protein conformation and vibrational dynamics. Slaved processes are tightly coupled to the solvent; their rates have approximately the same temperature dependence as the rate of the solvent fluctuations, but they are smaller. Because the temperature dependence is determined by the activation enthalpy, we propose that the solvent is responsible for the activation enthalpy, whereas the protein and the hydration shell control the activation entropy through the energy landscape. Bond formation is the prototype of nonslaved processes; opening and closing of channels are quintessential slaved motions. The prevalence of slaved motions highlights the importance of the environment in cells and membranes for the function of proteins.

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Year:  2002        PMID: 12444262      PMCID: PMC138562          DOI: 10.1073/pnas.212637899

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

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Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

2.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
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3.  Energy landscape of a native protein: jumping-among-minima model.

Authors:  A Kitao; S Hayward; N Go
Journal:  Proteins       Date:  1998-12-01

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Authors:  R M Daniel; J C Smith; M Ferrand; S Héry; R Dunn; J L Finney
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

5.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Structural fluctuations of myoglobin from normal-modes, Mössbauer, Raman, and absorption spectroscopy.

Authors:  B Melchers; E W Knapp; F Parak; L Cordone; A Cupane; M Leone
Journal:  Biophys J       Date:  1996-05       Impact factor: 4.033

7.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

8.  Structural relaxation and nonexponential kinetics of CO-binding to horse myoglobin. Multiple flash photolysis experiments.

Authors:  F Post; W Doster; G Karvounis; M Settles
Journal:  Biophys J       Date:  1993-06       Impact factor: 4.033

9.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

10.  Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.

Authors:  F Yang; G N Phillips
Journal:  J Mol Biol       Date:  1996-03-08       Impact factor: 5.469

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  153 in total

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Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

2.  Fast gating in the Shaker K+ channel and the energy landscape of activation.

Authors:  Daniel Sigg; Francisco Bezanilla; Enrico Stefani
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-12       Impact factor: 11.205

3.  Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-07       Impact factor: 11.205

Review 4.  Myoglobin: the hydrogen atom of biology and a paradigm of complexity.

Authors:  H Frauenfelder; B H McMahon; P W Fenimore
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-14       Impact factor: 11.205

5.  The influence of solvent composition on global dynamics of human butyrylcholinesterase powders: a neutron-scattering study.

Authors:  F Gabel; M Weik; B P Doctor; A Saxena; D Fournier; L Brochier; F Renault; P Masson; I Silman; G Zaccai
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

6.  Temperature derivative fluorescence spectroscopy as a tool to study dynamical changes in protein crystals.

Authors:  Martin Weik; Xavier Vernede; Antoine Royant; Dominique Bourgeois
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

7.  Different relaxations in myoglobin after photolysis.

Authors:  Matteo Levantino; Antonio Cupane; László Zimányi; Pál Ormos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

8.  Neutron frequency windows and the protein dynamical transition.

Authors:  Torsten Becker; Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

9.  Freezing immunoglobulins to see them move.

Authors:  L Bongini; D Fanelli; F Piazza; P De Los Rios; S Sandin; U Skoglund
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-13       Impact factor: 11.205

10.  Protein kinetics: structures of intermediates and reaction mechanism from time-resolved x-ray data.

Authors:  Marius Schmidt; Reinhard Pahl; Vukica Srajer; Spencer Anderson; Zhong Ren; Hyotcherl Ihee; Sudarshan Rajagopal; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-23       Impact factor: 11.205

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