| Literature DB >> 35326179 |
Siyu Di1,2, Shengxian Fan1,2, Fengjie Jiang1,2, Zhiqi Cong1,2.
Abstract
Cytochrome P450 monooxygenases (P450s) are promising versatile oxidative biocatalysts. However, the practical use of P450s in vitro is limited by their dependence on the co-enzyme NAD(P)H and the complex electron transport system. Using H2O2 simplifies the catalytic cycle of P450s; however, most P450s are inactive in the presence of H2O2. By mimicking the molecular structure and catalytic mechanism of natural peroxygenases and peroxidases, an artificial P450 peroxygenase system has been designed with the assistance of a dual-functional small molecule (DFSM). DFSMs, such as N-(ω-imidazolyl fatty acyl)-l-amino acids, use an acyl amino acid as an anchoring group to bind the enzyme, and the imidazolyl group at the other end functions as a general acid-base catalyst in the activation of H2O2. In combination with protein engineering, the DFSM-facilitated P450 peroxygenase system has been used in various oxidation reactions of non-native substrates, such as alkene epoxidation, thioanisole sulfoxidation, and alkanes and aromatic hydroxylation, which showed unique activities and selectivity. Moreover, the DFSM-facilitated P450 peroxygenase system can switch to the peroxidase mode by mechanism-guided protein engineering. In this short review, the design, mechanism, evolution, application, and perspective of these novel non-natural P450 peroxygenases for the oxidation of non-native substrates are discussed.Entities:
Keywords: cytochrome P450 monooxygenase; dual-functional small molecule; epoxidation; hydroxylation; oxidation; peroxidase; peroxygenase; protein engineering; sulfoxidation
Year: 2022 PMID: 35326179 PMCID: PMC8944620 DOI: 10.3390/antiox11030529
Source DB: PubMed Journal: Antioxidants (Basel) ISSN: 2076-3921
Figure 1The catalytic cycle of cytochrome P450 monooxygenase and the peroxide-shunt pathway.
Figure 2Active site structures of HRP ((A), PDB ID: 1ATJ) [58] and unspecific peroxygenase ((B), PDB ID: 2YOR) [59].
Figure 3Proof-of-concept of the dual-functional small molecule (DFSM)-facilitated P450 peroxygenase. (A) The NADPH-dependent P450BM3 monooxygenase. (B) Proposed catalytic cycle of the DFSM-facilitated P450 peroxygenase. (C) Chemical structures of the DFSM molecules. (D) Styrene epoxidation in the presence of the DFSM and control experiments.
Figure 4Structural basis of the DFSM-facilitated P450 peroxygenase. (A) Proposed pre-reaction state of P450BM3 in the presence of H2O2 and DFSM. (B) The model structure with NH2OH instead of H2O2. (C) The co-crystal structure of P450BM3_F87A in complex with NH2OH and Im-C6-Phe. (D) The binding interactions of Im-C6-Phe with P450BM3.
Figure 5Protein engineering of the DFSM-facilitated P450BM3 peroxygenase for catalyzing (R)-enantioselective epoxidation of styrene and its derivatives. (A) Key residues around the substrate-binding pocket of P450BM3; (B) protein engineering for styrene epoxidation; (C) the epoxidation of styrene derivatives by the DFSM-facilitated P450 peroxygenases.
Catalytic hydroxylation of small alkanes by various enzymes in literature.
| Entry | Enzyme | Alkanes | Final Product | PFR a | TTN b | Ref. |
|---|---|---|---|---|---|---|
| 1 | BM3_F87A/T268I/A184I/Im-C6-Phe | Propane | 2-Propanol | 630 | 1775 | [ |
| 2 | BM3_F87A/T268I/A82T/Im-C6-Phe | 2-Butanol | 1042 | 2253 | [ | |
| 3 | BM3/PFC10 | Propane | 2-Propanol | 70 | 700 | [ |
| 4 | BM3/PFC9-L-Leu | Propane | 2-Propanol | 256 | 2560 | [ |
| 5 | BM3/3CCPA-Pip-Phe | Propane | 2-Propanol | 615 | - | [ |
| 6 | BM3/PFC9 | 2-Butanol | 110 | 1100 | [ | |
| 7 | BM3/PFC11 | Propane | 2-Propanol | - | 1021 | [ |
| 8 | BM3/PFC7 | 2-Butanol | - | 3632 | [ | |
| 9 | BM3/C7AM-Pip-Phe | Ethane | Ethanol | 82.7 | - | [ |
| 10 | P450cam_EB | 2-Butanol | 520 | - | [ | |
| 11 | P450cam_EB_L294M/T185M/L1358P/G248A | Propane | 2-Propanol | 505 | - | [ |
| 12 | P450cam_EB_L294M/T185M/L1358P/G248A | Ethane | Ethanol | 78.2 | - | [ |
| 13 | P450PMOR1 | Propane | 2-Propanol | 455 | 35,600 | [ |
| 14 | P450PMOR2 | Propane | 2-Propanol | 370 | 45,800 | [ |
| 15 c | CYP52L1 | Propane | 1-Propanol | - | - | [ |
| 16 | sMMO | Methane | Methanol | 78 | - | [ |
| 17 | sMMO | Ethane | Ethanol | 45.6 | - | [ |
| 18 | sMMO | Propane | 2-Propanol | 33–58.8 | - | [ |
| 19 | sMMO | 2-Butanol | 7.2–28.8 | - | [ | |
| 20 | Propane | 2-Propanol | 17 | 999 | [ | |
| 21 | 2-Butanol | 21 | 1258 | [ |
a PFR: product formation rate in µmol·min−1·(µmol P450)−1. b TTN: total turnover number. c There is no catalytic turnover data reported.
Regioselective aromatic O-dealkylation by the DFSM-facilitated P450 peroxygenases.
|
| ||||||||
|---|---|---|---|---|---|---|---|---|
| Substrate | Enzyme System | Product | TON | |||||
| No. | R1 | R2 | R3 | No. | R2 | R3 | ||
|
| Me | H | H | BM3_F87A/T268I/Im-C5-Phe |
| H | H | 486 |
|
| Me | Me | H | BM3_F87A/T268I/Im-C6-Phe |
| Me | H | 356 |
|
| Me | OH | H | BM3_F87A/Im-C6-Phe |
| OH | H | 539 |
|
| Et | OH | H | BM3_F87G/T268G/Im-C5-Phe |
| OH | H | 99 |
|
| Me | OMe | H | BM3_F87A/T268I/Im-C6-Phe |
| OMe | H | 287 |
|
| H | OMe | OMe | BM3_F87G/T268V/Im-C5-Phe |
| OH | OMe | 165 |
Figure 6DFSM-facilitated P450 peroxygenases catalyzed sulfoxidation and hydroxylation.
Figure 7Native monooxygenase activity. DFSM-facilitated peroxygenase activity and switching to peroxidase activity by mechanism-guided protein engineering.