Literature DB >> 29052962

Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism.

Naofumi Kamimura1, Kenji Takahashi1, Kosuke Mori1, Takuma Araki1, Masaya Fujita1, Yudai Higuchi1, Eiji Masai1.   

Abstract

Lignin is the most abundant phenolic polymer; thus, its decomposition by microorganisms is fundamental to carbon cycling on earth. Lignin breakdown is initiated by depolymerization catalysed by extracellular oxidoreductases secreted by white-rot basidiomycetous fungi. On the other hand, bacteria play a predominant role in the mineralization of lignin-derived heterogeneous low-molecular-weight aromatic compounds. The outline of bacterial catabolic pathways for lignin-derived bi- and monoaryls are typically composed of the following sequential steps: (i) funnelling of a wide variety of lignin-derived aromatics into vanillate and syringate, (ii) O demethylation of vanillate and syringate to form catecholic derivatives and (iii) aromatic ring-cleavage of the catecholic derivatives to produce tricarboxylic acid cycle intermediates. Knowledge regarding bacterial catabolic systems for lignin-derived aromatic compounds is not only important for understanding the terrestrial carbon cycle but also valuable for promoting the shift to a low-carbon economy via biological lignin valorisation. This review summarizes recent progress in bacterial catabolic systems for lignin-derived aromatic compounds, including newly identified catabolic pathways and genes for decomposition of lignin-derived biaryls, transcriptional regulation and substrate uptake systems. Recent omics approaches on catabolism of lignin-derived aromatic compounds are also described.
© 2017 The Authors. Environmental Microbiology published by Society for Applied Microbiology and JohnWiley & Sons Ltd.

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Year:  2017        PMID: 29052962     DOI: 10.1111/1758-2229.12597

Source DB:  PubMed          Journal:  Environ Microbiol Rep        ISSN: 1758-2229            Impact factor:   3.541


  50 in total

1.  Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans.

Authors:  Jacob H Cecil; David C Garcia; Richard J Giannone; Joshua K Michener
Journal:  Appl Environ Microbiol       Date:  2018-10-30       Impact factor: 4.792

2.  Promoting microbial utilization of phenolic substrates from bio-oil.

Authors:  Kirsten Davis; Marjorie R Rover; Davinia Salvachúa; Ryan G Smith; Gregg T Beckham; Zhiyou Wen; Robert C Brown; Laura R Jarboe
Journal:  J Ind Microbiol Biotechnol       Date:  2019-07-04       Impact factor: 3.346

3.  Allelopathy: The Chemical Language of Plants.

Authors:  Francisco A Macías; Alexandra G Durán; José M G Molinillo
Journal:  Prog Chem Org Nat Prod       Date:  2020

4.  Identification of functionally important residues and structural features in a bacterial lignostilbene dioxygenase.

Authors:  Eugene Kuatsjah; Meghan M Verstraete; Marek J Kobylarz; Alvin K N Liu; Michael E P Murphy; Lindsay D Eltis
Journal:  J Biol Chem       Date:  2019-07-10       Impact factor: 5.157

5.  Crystal Structures of L-DOPA Dioxygenase from Streptomyces sclerotialus.

Authors:  Yifan Wang; Inchul Shin; Yizhi Fu; Keri L Colabroy; Aimin Liu
Journal:  Biochemistry       Date:  2019-06-25       Impact factor: 3.162

6.  DdvK, a Novel Major Facilitator Superfamily Transporter Essential for 5,5'-Dehydrodivanillate Uptake by Sphingobium sp. Strain SYK-6.

Authors:  Kosuke Mori; Koh Niinuma; Masaya Fujita; Naofumi Kamimura; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2018-10-01       Impact factor: 4.792

7.  An NADH-Dependent Reductase from Eubacterium ramulus Catalyzes the Stereospecific Heteroring Cleavage of Flavanones and Flavanonols.

Authors:  Annett Braune; Michael Gütschow; Michael Blaut
Journal:  Appl Environ Microbiol       Date:  2019-09-17       Impact factor: 4.792

8.  Bacterial Catabolism of β-Hydroxypropiovanillone and β-Hydroxypropiosyringone Produced in the Reductive Cleavage of Arylglycerol-β-Aryl Ether in Lignin.

Authors:  Yudai Higuchi; Shogo Aoki; Hiroki Takenami; Naofumi Kamimura; Kenji Takahashi; Shojiro Hishiyama; Christopher S Lancefield; O Stephen Ojo; Yoshihiro Katayama; Nicholas J Westwood; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

9.  The Syringate O-Demethylase Gene of Sphingobium sp. Strain SYK-6 Is Regulated by DesX, while Other Vanillate and Syringate Catabolism Genes Are Regulated by DesR.

Authors:  Takuma Araki; Kenta Tanatani; Naofumi Kamimura; Yuichiro Otsuka; Muneyoshi Yamaguchi; Masaya Nakamura; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2020-10-28       Impact factor: 4.792

10.  Bacterial Community Coexisting with White-Rot Fungi in Decayed Wood in Nature.

Authors:  Yosuke Iimura; Hisashi Abe; Yuichiro Otsuka; Yuya Sato; Hiroshi Habe
Journal:  Curr Microbiol       Date:  2021-07-02       Impact factor: 2.188

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