| Literature DB >> 34939174 |
Zhenwei Shi1,2,3, Zhen Zhang4,5, Zaiyi Liu6,7, Lujun Zhao8, Zhaoxiang Ye9, Andre Dekker10, Leonard Wee10.
Abstract
PURPOSE: Studies based on machine learning-based quantitative imaging techniques have gained much interest in cancer research. The aim of this review is to critically appraise the existing machine learning-based quantitative imaging analysis studies predicting outcomes of esophageal cancer after concurrent chemoradiotherapy in accordance with PRISMA guidelines.Entities:
Keywords: Clinical outcomes; Concurrent chemoradiotherapy; Esophageal cancer; Methodological assessment; Quantitative imaging analysis; Radiomics
Mesh:
Year: 2021 PMID: 34939174 PMCID: PMC9206619 DOI: 10.1007/s00259-021-05658-9
Source DB: PubMed Journal: Eur J Nucl Med Mol Imaging ISSN: 1619-7070 Impact factor: 10.057
Fig. 1Flowchart of the literature search and study selection (PRISMA 2009 [65])
Summary of general study characteristics
| Ref | Cancer type (recruitment period) | Imaging modality | Imaging acquisition settings | Treatment | Sample size | Type of features | Radiomics software | Non-radiomics cofactors |
|---|---|---|---|---|---|---|---|---|
Xie: 2021 [ | ESCC 2007–2016 | CT | Inst 1: 120KVp, 200-400 mA, 2.5 mm slices; Inst 2: 120KVp, 200-300 mA, 5 mm | nCRT | 65 (train) 41 (test) | HF | PyRadiomics | Genetic |
Beukinga: 2021 [ | ESCC and EAD 2010–2018 | PET/ CT | Gaussian filter of 6.5 mm in full-width at half-maximum | nCRT | 96 (ESCC: 88 EAD: 8) | HF | In-house (Matlab V2018a) | Clinical factors, HER2 and CD44 |
Hu: 2021 [ | ESCC 2007–2018 | CT | Same as Hu:2020 | nCRT | 161 (train) 70 (test) | HF and DLF | PyRadiomics (V2.1.2) | No |
Wang: 2021 [ | ESCC and EAD 2012–2018 | CT | 120KVp, 200 mA, 3 mm | dCCRT | 200 (train, ESCC: 189, EAD: 11) 200 (val., ESCC: 195, EAD: 5) | HF | 3D Slicer (V4.8.1) | Clinicopathological, dosimetrics, and hematological |
Li: 2020 [ | ESCC Train 2009–2013 Val. 2015–2018 | PET/CT | Voxel size: 4 × 4 × 5 mm3 | dCCRT | 152 (train) 32 (val.) | HF | PyRadiomics (V2.0.1) | Clinical and classical PET |
Xie: 2020 [ | ESCC 2008–2014 | CT | 120 kV, 180–280 mA, 3 mm | CCRT | 57 | HF | IBEX (V1.0β) | Clinical factors |
Hu: 2020 [ | ESCC 2007–2018 | CT | 120 kV, 200–400 mA 2.5 mm (inst 1) 5 mm (inst 2) voxel sizes: 1 × 1 × 5 mm3 | nCRT | 161 (train) 70 (test) | HF | PyRadiomics (V3.0) | No |
Luo: 2020 [ | ESCC 2013–2015 | CT | 120 kV, 120 mAs, 5 mm | dCCRT | 160 (train) 66 (val.) | HF | 3DSlicer (V4.10.2) | Clinical factors |
Li: 2020 [ | ESCC 2012–2019 | CT | 120 kV/140 kV, 140–300 mA, 5 mm | nCRT | 121 | HF | IBEX | Clinical factors |
Zhang: 2020 [ | EAD 2010–2016 | PET/ CT | 120 kVp, 20–200 mA | surgery alone, neoadjuvant chemotherapy, and nCRT | 190 | HF | Matlab | Clinical factors |
Du: 2020 [ | ESCC 2017–2019 | CBCT | 125 kVp, 80 mA, 13 ms, 680mAs, pixel size: 384 × 384, 2.5 mm, half-fan CBCT | dCCRT or definitive radiotherapy | 67 (train) 29 (val.) | HF | 3D Slicer (V4.10.2) | Clinical and dosimetrics |
Foley: 2019 [ | ESCC and EAD 2010–2015 | PET/ CT | Same as Foley:2018 | Same as Foley:2018 | 46 (external val.) | HF | In-house (Matlab) | Clinical and classical PET |
Xie: 2019 [ | ESCC Train 2012–2016 Val. 2008–2011 | CT | Inst 1: 120 kVp, 406 mAs, 3–5 mm Inst 2: 120 kVp, 150 mAs, 3–8 mm Voxel size: 1 × 1 × 5 mm3 | dCCRT | 87 (train) 46 (val.) | HF | In-house (Matlab 2015b) | No |
Wang: 2019 [ | ESCC Train 2012–2016 Val. 2004–2014 | CT | 120 kV, 180-280 mA, 3 mm | CCRT and RT alone | 83 (train) 98 + 283 (val.) | HF | IBEX (V1.0β) | Clinical |
Chen: 2019 [ | ESCC 2011–2017 | PET/ CT | PET scanner: 120 kV, 12 mA, 3.75 mm | dCCRT | 44 | HF | CGITA | Clinical and classical PET |
Yan: 2019 [ | ESCC 2013–2017 | CT | 120kVp, 4 mm | nCRT | 32 | HF | CUBETAB (Matlab V2017b) | None |
| Yang: 2019 [ | ESCC 2012–2016 | CT | 120 kVp, pixel size: 1.46 mm, 5 mm | nCRT | 44 (train) 11 (test) | HF | 3DSlicer (V4.8.1) | Clinical factors |
Jin: 2019 [ | ESCC, EAD, and Small cell 2012–2015 | CT | 120 kV, 180–280 mA, 3 mm | CCRT | 94 (ESCC: 92, EAD: 1, Small cell: 1) | HF | IBEX | Clinical and dosimetrics |
Foley: 2018 [ | ESCC and EAD Train 2010–2014 Val. 2014–2015 | PET/ CT | PET: 120 kVp, 20–200 mA | Multiple treatments incl nCRT and dCCRT | 302 (train, ESCC: 65 EAD: 237) 101 (val., ESCC: 79 EAD: 22) | HF | In-house (Matlab) | Clinical and classical PET |
Larue: 2018 [ | ESCC ( 2010–2016 | CT | Inst 1: 120 kV, 2.5–5 mm Inst 2: 120 kV, 1–3 mm Voxel size: 1 × 1 × 3 mm3 | nCRT | 165 (train) 74 (val.) | HF | In-house (Matlab) | Clinical |
Beukinga: 2018 [ | ESCC and EAD 2014–2017 | PET/CT | 80–120 kV, 20–35 mAs, 5 mm | nCRT | 73 (ESCC: 8, EAD: 65) | HF | In-house (Matlab V2014b) | Clinical and classical PET |
Riyahi: 2018 [ | ESCC and EAD 2006–2009 | PET/CT | Same as Tan:2013 | Same as Tan:2013 | Same as Tan:2013 | HF | Elastix and ITK toolbox | Classical PET features |
Paul: 2017 [ | n.r | PET/CT | Voxel size: 4 × 4 × 2mm3 | CCRT | 65 | HF | n.r | Clinical and classical PET |
Desbordes: 2017 [ | ESCC and EAD 2006–2013 | PET/CT | Voxel size: 4 × 4 × 2 mm3 | CCRT | 65 (ESCC: 57 EAD: 8) | HF | n.r | Clinical and classical PET |
| Nakajo: 2017 [ | n.r. 2011–2013 | PET/ CT | 120 kV, 35–100 mA, 3.75 mm | CCRT | 52 | HF | In-house (Python) | classical PET features |
| Beukinga: 2017 [ | ESCC and EAD 2009–2016 | PET/CT | PET: 0.98 × 0.98 mm, 2 mm; CT: 0.98 × 0.98 mm, 3 mm | nCRT | 97 (ESCC: 9, EAD: 88) | HF | n.r | Clinical and classical PET |
Wakatsuki: 2017 [ | ESCC and EAD 2008–2015 | CT | 120 kV, 5 mm | nCRT | 50 (ESCC: 46, EAD: 4) | HF | Unnamed | Clinical and histopathologic |
Hou: 2017 [ | ESCC 2015–2016 | CT | 120 kV, 200–250 mAs, 2.5–3 mm, pixel size: 0.97 × 0.97 mm | dCCRT | 37 (train) 12 (test) | HF | In-house (Matlab 2015a) | No |
Yip: 2016 [ | ESCC and EAD | PET/CT | n.r | nCRT | 45 (ESCC: 1, EAD: 44) | HF | CGITA | Classical PET features |
Rossum: 2016 [ | EAD 2006–2013 | PET/CT | CT: 120 kV, 300 mA, 3.75 mm, voxel size: 5.47 × 5.47 × 3.27 mm | nCRT | 217 | HF | IBEX | Clinical and classical PET |
Ypsilantis: 2015 [ | ESCC and EAD n.r | PET/CT | 3.27 mm, pixel size: 4.7 × 4.7 mm | nCRT | 107 (ESCC: 20, EAD: 86, Undefined: 1) | HF/DLF | n.r | No |
Yip: 2014 [ | ESCC and EAD 2005–2008 | CT | 120 kV, 180–280 mA, 3–5 mm | dCCRT | 36 (ESCC: 26 EAD: 9 Not specified:1) | HF | TexRAD | Clinical |
Zhang: 2014 [ | ESCC and EAD 2006–2009 | PET/ CT | Same as Tan:2013 | nCRT | 20 (ESCC: 3, EAD: 17) | HF | n.r | Clinical and classical PET |
Tan: 2013 [ | ESCC and EAD 2006–2009 | PET/ CT | 120 kV, 200 mA, 0.98 × 0.98 × 4 mm3 (CT) 4 × 4 × 4 mm3 (PET) | nCRT | 20 (ESCC: 3, EAD: 17) | HF | n.r | Classical PET features |
Hatt: 2013 [ | ESCC and EAD 2004–2008 | PET/ CT | 120 kV, 100mAs (CT) PET voxel size: 4 × 4 × 4 mm3 | CCRT | 50 (ESCC: 36, EAD: 14) | HF | n.r | Classical PET features |
Tan: 2013 [ | ESCC and EAD 2006–2009 | PET/ CT | Same as Tan:2013 | nCRT | 20 (ESCC: 3 EAD: 17) | HF | ITK | Classical PET features |
Tixier: 2011 [ | ESCC and EAD 2003–2008 | PET/ CT | n.r | CCRT | 41 (ESCC: 31 EAD: 10) | HF | n.r | Classical PET features |
Abbreviations used in the table: n.r. not reported; val. validation; ESCC esophageal squamous cell carcinoma; EAD esophageal adenocarcinoma; nCRT neoadjuvant chemoradiotherapy; CCRT concurrent chemoradiotherapy; dCCRT definitive concurrent chemoradiotherapy; RT radiotherapy; CT computed tomography; CBCT cone-beam computed tomography; HF handcrafted features; DLF deep learning-based features
Summary of radiomics-based prediction model characteristics described in included studies
| Ref | Data type | # of institution(s) | Predicted | # of events/# of samples | # of features (considered / in final model) | Type of model | Reported performance | Model calibration tested |
|---|---|---|---|---|---|---|---|---|
Xie: 2021 [ | R + P | 2 | DFS | Train: 21/28 Int. validation: 24/37 External test: 13/41 | 2553/8 | Cox | (train, validation and external test) AUC = 0.912, 0.852, and 0.769 C-index = 0.869, 0.812, and 0.719 | Yes |
Beukinga: 2021 [ | R | 1 | pCR after nCRT | Group 1: 21/96 Group 2: 9/43 | 101/2 | LR | AUC = 0.685 and 0.857 (Best of group 1 and group 2) | Yes |
Hu: 2021 [ | R | 2 | pCR after nCRT | Train: 74/161 Test: 31/70 | Handcrafted features: 851/7 Handcrafted combined with deep learning-based: n.r./14 | SVM | Handcrafted model: AUC = 0.822, and 0.725 (train and test) Deep learning-based: AUC = 0.807–0.901, and 0.635–0.805 (train and test) | Yes |
Wang: 2021 [ | R | 2 | RP | Train: 45/200 Val.: 41/200 | 850/24 | Linear regression | C-index = 0.975, and 0.921 (internal and external val.) | Yes |
Li: 2020 [ | R | 2 | OS, DFS, LC | n.r./184 | DFS: 105/3 OS: 105/4 LC: 105/4 | Cox | Clustering of OS: | No |
Xie: 2020 [ | R | 1 | OS | 1-year survival: 43/57 | 16/4 | Cox | 1-year and 2-year survival: AUC = 0.79 | No |
Hu: 2020 [ | R | 2 | pCR after nCRT | Train: 74/161 Test: 31/70 | Intratumoral: 1208/16 Peritumoral: 1036/8 Combined model: 7 (intra) and 6 (peri) | 8 different types of models | Combined model AUC = 0.906, and 0.852 (train and test) | Yes |
Luo: 2020 [ | R | 1 | CR after CCRT | Train: 56/160 Val.: 22/66 | 851/7 | LASSO-LR | AUC = 0.844, and 0.807 (train and val.) | No |
Li: 2020 [ | R | 1 | pCR after nCRT | 51/121 | 405/18 | LR | AUC = 0.84 (val.) | Yes |
Zhang: 2020 [ | R + P | 2 | Clinical lymph node staging | Train: 75/130 Val.: 35/60 | 154/9 | LR | AUC = 0.82, and 0.69 (train and val.) | Yes |
| Du: 2020 [ | R | 1 | RP | 39/96 | 851/2 | LR | AUC = 0.836, and 0.905 (train and val.) | Yes |
| Foley: 2019 [ | R + P | 2 | OS | External val.: 26/46 | 16/3 | Cox | X2 = 1.27, df = 3, | Yes |
Xie: 2019 [ | R | 2 | OS | Train: 26/87 Val.: 9/46 | 548/7 | Cox | AUC = 0.811 (Train) AUC = 0.805 (Val.) | No |
Wang: 2019 [ | R | 3 | OS PFS | Train: 23/83, Val.1: 18/98, Val.2: 53/283 Train: 21/83, Val.1: 8/98, Val.2 36/283 | 1/1 | Cox | (Train, Val. 1 and 2) OS: C-index = 0.64, 0.61, and 0.58 PFS: C-index = 0.66, 0.60, and 0.57 | No |
Chen: 2019 [ | R | 1 | pCR after nCRT, DFS, OS | nCRT response: 17/42 | nCRT response 23/1 | n.r | Clustering response to nCRT: | No |
Yan: 2019 [ | R | 1 | CR after RT survival | CR: 22/32 | CR: 10/4 Survival: 10/2 | n.r | RT response: Survival: | No |
Yang: 2019 [ | R | 1 | pCR after nCRT | Train: 19/44 Test: 4/11 | 1030/5 (Model 1), 6 (Model 2/3) | LR | Model 1(bin size = 32): 0.86, and 0.79 (train and test) | No |
Jin: 2019 [ | R | 1 | response to CCRT | 58/94 | 42/n.r | SVM, XGBoost | AUC = 0.689 | No |
Foley: 2018 [ | R | 1 | OS | Train: 70/302 Test: 43/101 | 16/3 | Cox | X2 143.14, df 3, X2 20.621, df 3, | No |
Larue: 2018 [ | R | 2 | OS | Train: 67/165 Val.: 25/74 | 1049/40 | RF | AUC = 0.69 (Train) AUC = 0.61 (Val.) | No |
| Beukinga: 2018 [ | P | 1 | pCR after nCRT | 16/73 | 113/6 | LASSO-LR | AUC = 0.82 and 0.81 (train and val.) | Yes |
Riyahi: 2018 [ | R | 1 | pCR/mRD after nCRT | 9/20 | 664/2 | SVM-LASSO | AUC = 0.94 ± 0.05 | No |
Paul: 2017 [ | R | 1 | CR after CCRT, OS | CR: 41/65 OS: 16/65 | CR: 45/9 OS: 45/8 | RF | CR: AUC = 0.823 ± 0.032 OS: AUC = 0.750 ± 0.108 | No |
Desbordes: 2017 [ | R | 1 | CR after CCRT, 3-year OS | CR: 41/65 OS: 24/65 | 45/1 | RF | CR: AUC = 0.836 ± 0.105 OS: AUC = 0.822 ± 0.059 | No |
Nakajo: 2017 [ | R | 1 | CR/RP after CCRT, PFS, OS | CR: 18/52 | CR 6/2 PFS and OS 6/0 | Cox | CR: AUC = 0.75 PFS and OS: | No |
| Beukinga: 2017 [ | P | 1 | pCR after nCRT | 19/97 | 140/20 | LR | AUC = 0.78, and 0.74 (train and val.) | Yes |
| Wakatsuki: 2017 [ | R | 1 | response to nCRT | 17/50 | 1/1 CT number | LR | AUC = 0.73, | No |
Hou: 2017 [ | R | 1 | CR/PR after CCRT | Train: 26/37 Test: 7/12 | SVM: 214/9 ANN: 214/7 | SVM, ANN | ANN: accuracy = 0.972, and 0.917; AUC = 0.927, and 0.800 (train and test) SVM: accuracy = 0.891, and 0.667; AUC = 0.818, and 0.600 (train and test) | No |
Yip: 2016 [ | R | 1 | response to nCRT | 30/45 | 3/3 | n.r | AUC = 0.72‒0.78 | No |
Rossum: 2016 [ | R | 1 | pCR after nCRT | 59/217 | 78/9 | LR | C-index = 0.82 (apparent) C-index = 0.77 (corrected) | Yes |
Ypsilantis: 2015 [ | n.r | 1 | response to nCRT | 38/107 | 85/n.r | LR, gradient boosting, RF, SVM, CNN | Accuracy: 73.4 ± 5.3 | No |
| Yip: 2014 [ | R | 1 | OS | 5/36 | 6/4 | Cox | AUC = 0.802 | No |
Zhang: 2014 [ | R | 1 | pCR/mRD after nCRT | 9/20 | 137/14 | SVM, LR | AUC = 1 (no misclassifications) | No |
Tan: 2013 [ | R | 1 | pCR/mRD after nCRT | 9/20 | 16 + 19/2 + 16 | n.r | Texture feature: AUC = 0.83, p = 0.01; histogram distances: AUC = 0.78–0.89, | No |
Hatt: 2013 [ | R | 1 | CR/PR after CCRT | 36/50 | 9/9 | n.r | (best) AUC = 0.90 | No |
Tan: 2013 [ | R | 1 | pCR/mRD after nCRT | 10/20 | 33/2 | n.r | (best) AUC = 0.85 | No |
Tixier: 2011 [ | R | 1 | CR/PR after CCRT | CR: 9/41 PR: 21/41 | 38/4 | n.r | Sensitivity: 76–92% Specificity: 56–91% | No |
Abbreviations used in the table: # number; R retrospective; P prospective; OS overall survival; DFS disease-free survival; PFS progression-free survival; LC local control; pCR complete pathologic response; mRD microscopic residual disease; SVM support vector machine; RF random forest; RT radiotherapy; CR complete responders; PR partial responders; LASSO least absolute shrinkage and selection operator; LR logistic regression; XGBoost extreme gradient boosting; ANN artificial neural network; CNN convolutional neural network; AUC area under the receiver operating characteristic curve; RT radiotherapy; nCRT neoadjuvant chemoradiotherapy; CCRT concurrent chemoradiotherapy; RP radiation pneumonitis
Assessment of methodological quality of included studies
Red circle: Poor rating, Yellow circle: Moderate rating, Green circle: Good rating
Fig. 2Reported AUC/C-index of the included studies with number of good items were classified by Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis (TRIPOD). Type 1a: development only; type 1b: development and validation using resampling; type 2a: random split-sample development and validation; type 2b: non-random split-sample development and validation; type 3: development and validation using separate data; type 4: validation only