| Literature DB >> 32910196 |
Yihuai Hu1,2,3, Chenyi Xie4, Hong Yang1,2,3, Joshua W K Ho5, Jing Wen2,3, Lujun Han2,6, Keith W H Chiu4, Jianhua Fu1,2,3, Varut Vardhanabhuti4.
Abstract
Importance: For patients with locally advanced esophageal squamous cell carcinoma, neoadjuvant chemoradiation has been shown to improve long-term outcomes, but the treatment response varies among patients. Accurate pretreatment prediction of response remains an urgent need. Objective: To determine whether peritumoral radiomics features derived from baseline computed tomography images could provide valuable information about neoadjuvant chemoradiation response and enhance the ability of intratumoral radiomics to estimate pathological complete response. Design, Setting, and Participants: A total of 231 patients with esophageal squamous cell carcinoma, who underwent baseline contrast-enhanced computed tomography and received neoadjuvant chemoradiation followed by surgery at 2 institutions in China, were consecutively included. This diagnostic study used single-institution data between April 2007 and December 2018 to extract radiomics features from intratumoral and peritumoral regions and established intratumoral, peritumoral, and combined radiomics models using different classifiers. External validation was conducted using independent data collected from another hospital during the same period. Radiogenomics analysis using gene expression profile was done in a subgroup of the training set for pathophysiological explanation. Data were analyzed from June to December 2019. Exposures: Computed tomography-based radiomics. Main Outcomes and Measures: The discriminative performances of radiomics models were measured by area under the receiver operating characteristic curve.Entities:
Year: 2020 PMID: 32910196 PMCID: PMC7489831 DOI: 10.1001/jamanetworkopen.2020.15927
Source DB: PubMed Journal: JAMA Netw Open ISSN: 2574-3805
Figure 1. Analysis Flowchart
DC indicates decision tree; KNN, k-nearest neighbors; LR, linear regression; NB, naive bayes; RF, random forest; RFA, recursive feature addition; ROI, region of interest; SVM, support vector machine; and XGboost, extreme gradient boosting.
Patient Characteristics for Training and Test Sets
| Characteristic | Patients, No. (%) | |||||
|---|---|---|---|---|---|---|
| Institution 1 (training set) | Institution 2 (test set) | |||||
| Non-pCR (n = 87) | pCR (n = 74) | Non-pCR (n = 39) | pCR (n = 31) | |||
| Age, mean (SD), y | 58.26 (6.77) | 57.58 (7.00) | .53 | 64.85 (8.83) | 63.26 (12.67) | .54 |
| Sex | ||||||
| Male | 72 (83) | 62 (84) | >.99 | 33 (85) | 25 (81) | .91 |
| Female | 15 (17) | 12 (16) | 6 (15) | 6 (19) | ||
| Clinical T stage | ||||||
| 1b | 0 | 1 (1) | .59 | 0 | 0 | .50 |
| 2 | 23 (26) | 19 (26) | 1 (23) | 2 (7) | ||
| 3 | 61 (70) | 53 (72) | 37 (95) | 29 (93) | ||
| 4a | 3 (4) | 1 (1) | 1 (2) | 0 | ||
| Clinical N stage | ||||||
| 0 | 3 (3) | 5 (7) | .43 | 3 (8) | 2 (7) | .51 |
| 1 | 40 (46) | 39 (53) | 12 (31) | 15 (48) | ||
| 2 | 37 (43) | 23 (31) | 20 (51) | 12 (39) | ||
| 3 | 7 (8) | 7 (9) | 4 (10) | 2 (6) | ||
| Clinical stage group | ||||||
| I | 0 | 1 (1) | .69 | 0 | 0 | .65 |
| II | 13 (15) | 13 (18) | 3 (8) | 2 (7) | ||
| III | 64 (74) | 51 (69) | 31 (80) | 27 (87) | ||
| IV A | 10 (11) | 9 (12) | 5 (12) | 2 (6) | ||
| Tumor location | ||||||
| Proximal third | 6 (7) | 11 (15) | .23 | 2 (5) | 0 | .38 |
| Middle third | 52 (60) | 43 (58) | 18 (46) | 13 (42) | ||
| Distal third | 29 (33) | 20 (27) | 19 (49) | 18 (58) | ||
| Histologic grade | ||||||
| G1 | 5 (6) | 3 (4) | .38 | 0 | 3 (10) | .10 |
| G2 | 52 (60) | 52 (70) | 30 (77) | 19 (61) | ||
| G3 | 30 (34) | 19 (26) | 9 (23) | 9 (29) | ||
| Tobacco use | ||||||
| No | 33 (38) | 30 (41) | .86 | 13 (33) | 11 (36) | >.99 |
| Yes | 54 (62) | 44 (59) | 26 (67) | 20 (64) | ||
| Alcohol use | ||||||
| No | 56 (64) | 53 (72) | .42 | 15 (39) | 15 (48) | .56 |
| Yes | 31 (36) | 21 (28) | 24 (61) | 16 (52) | ||
| Family history of cancer | ||||||
| No | 69 (79) | 57 (77) | .87 | 33 (85) | 26 (84) | >.99 |
| Yes | 18 (21) | 17 (23) | 6 (15) | 5 (16) | ||
Abbreviation: pCR, pathological complete response.
Cancer staging was done with the American Joint Committee on Cancer TNM staging system (8th edition).
Figure 2. Predictive Performance of Radiomics Models
Graphs show receiver operating characteristic curve curves of the intratumoral, peritumoral, and combined radiomics models constructed by support vector machine with radial basis function kernel for training set (A) and test set (B). AUC indicates area under the receiver operating characteristic curve.
Description of Selected Features in the Combined Model Using Support Vector Machine With Radial Basis Function Kernel
| Group and filter | Feature class | Feature |
|---|---|---|
| Intratumoral feature | ||
| Wavelet (HHH) | GLSZM | Large area low gray level emphasis |
| LoG (σ = 2 mm) | First order | Kurtosis |
| Wavelet (LLL) | GLSZM | Large area low gray level emphasis |
| LoG (σ = 2 mm) | First order | Median |
| LoG (σ = 5 mm) | GLCM | Sum average |
| LoG (σ = 2 mm) | GLCM | Inverse variance |
| Wavelet (HLH) | First order | Median |
| Peritumoral feature | ||
| Wavelet (HHH) | First order | Median |
| Wavelet (HHH) | GLCM | Inverse difference normalized |
| Wavelet (LLL) | GLCM | Cluster shade |
| LoG (σ = 1 mm) | First order | Kurtosis |
| Original | GLSZM | Gray level nonuniformity normalized |
| Wavelet (HLH) | First order | Kurtosis |
Abbreviations: GLSZM, gray level size zone matrix; GLCM, gray level co-occurrence matrix; LoG, Laplacian of Gaussian.
For wavelet filtration, H and L represent high-pass filter and low-pass filter on the x, y, and z directions, respectively.
Figure 3. Radiomics Feature Maps
Radiologist-annotated intratumoral and peritumoral regions and the corresponding radiomics expression heatmaps for top selected feature on representative CT images from patients with and without pathological complete response (pCR). Panel A shows original computed tomography (CT) images in the soft-tissue window setting. Panel B shows expression heat maps for intratumoral first order kurtosis by Laplacian of Gaussian (LoG; σ = 2 mm). Panel C shows expression heat maps for peritumoral gray level nonuniformity normalized (GLSZM) without filters. Radiomics features were scaled between 0 and 1 for comparison. Red and blue correspond to higher and lower values, respectively.