| Literature DB >> 32439976 |
Maryam Elahi1, Vahid Rakhshan2.
Abstract
Owing to the high incidence and mortality of oral squamous cell carcinoma (OSCC), knowledge of its diagnostic and prognostic factors is of significant value. The biomarkers 'CD16, CD57, transforming growth factor beta 1 (TGF-β1), and MED15' can play crucial roles in tumorigenesis, and hence might contribute to diagnosis, prognosis, and treatment. Since there was no previous study on MED15 in almost all cancers, and since the studies on diagnostic/prognostic values of the other three biomarkers were a few in OSCC (if any) and highly controversial, this study was conducted. Biomarker expressions in all OSCC tissues and their adjacent normal tissues available at the National Tumor Bank (n = 4 biomarkers × [48 cancers + 48 controls]) were estimated thrice using qRT-PCR. Diagnostic values of tumors were assessed using receiver-operator characteristic (ROC) curves. Factors contributing to patients' survival over 10 years were assessed using multiple Cox regressions. ROC curves were used to estimate cut-off points for significant prognostic variables (α = 0.05). Areas under the curve pertaining to diagnostic values of all markers were non-significant (P > 0.15). Survival was associated positively with tumoral upregulation of TGF-β1 and downregulation of CD16, CD57, and MED15. It was also associated positively with younger ages, lower histological grades, milder Jacobson clinical TNM stages (and lower pathological Ns), smaller and thinner tumors, and surgery cases not treated with incisional biopsy (Cox regression, P < 0.05). The cut-off point for clinical stage -as the only variable with a significant area under the curve- was between the stages 2 and 3. Increased TGF-β1 and reduced CD16, CD57, and MED15 expressions in the tumor might independently favor the prognosis. Clinical TNM staging might be one of the most reliable prognostic factors, and stages above 2 can predict a considerably poorer prognosis.Entities:
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Year: 2020 PMID: 32439976 PMCID: PMC7242386 DOI: 10.1038/s41598-020-65145-3
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Descriptive statistics of continuous variables including demographics, tumor characteristics, ΔCts, and ΔΔCts.
| Variable | N | Mean | SD | 95% CI | Min | Q1 | Med | Q3 | Max | |
|---|---|---|---|---|---|---|---|---|---|---|
| Patient Age | 48 | 63.81 | 15.33 | 59.36 | 68.26 | 23.37 | 57.91 | 64.7 | 75.74 | 90.39 |
| Tumor Size | 47 | 47.13 | 25.81 | 39.55 | 54.7 | 15 | 30 | 40 | 70 | 120 |
| Tumor Volume | 47 | 58.93 | 135.8 | 19.06 | 98.8 | 0.75 | 8.4 | 14 | 56.87 | 864 |
| Tumor Depth | 46 | 18.18 | 14.96 | 13.74 | 22.63 | 1.5 | 7.0 | 18.5 | 25.0 | 80.0 |
| ΔCt CD16 tumoral | 48 | −3.841 | 3.054 | −4.728 | −2.954 | −10.38 | −6.034 | −4.09 | −1.611 | 2.78 |
| ΔCt CD16 normal | 48 | −3.666 | 3.023 | −4.544 | −2.788 | −11.49 | −5.829 | −3.215 | −1.735 | 1.78 |
| ΔΔCt CD16 | 48 | −0.1752 | 4.176 | −1.388 | 1.037 | −9.19 | −3.395 | −0.11 | 2.613 | 9.88 |
| ΔCt CD57 tumoral | 48 | −6.05 | 3.808 | −7.156 | −4.944 | −12.5 | −8.845 | −5.633 | −3.738 | 3.115 |
| ΔCt CD57 normal | 48 | −5.269 | 3.408 | −6.258 | −4.279 | −14.35 | −6.894 | −4.617 | −2.922 | −0.215 |
| ΔΔCt CD57 | 48 | −0.7829 | 3.769 | −1.877 | 0.3114 | −8.16 | −3.458 | −1.055 | 1.385 | 7.83 |
| ΔCt TGF-β1 tumoral | 48 | −4.187 | 3.376 | −5.168 | −3.207 | −11.01 | −6.045 | −4.038 | −1.97 | 4.43 |
| ΔCt TGF-β1 normal | 48 | −4.148 | 3.346 | −5.119 | −3.176 | −12.62 | −5.915 | −3.663 | −1.705 | 4.143 |
| ΔΔCt TGF-Β1 | 48 | −0.0394 | 4.135 | −1.24 | 1.161 | −9.69 | −2.258 | −0.58 | 2.495 | 9.93 |
| ΔCt MED15 tumoral | 48 | −4.426 | 3.324 | −5.392 | −3.461 | −10.68 | −6.19 | −4.118 | −2.803 | 4.208 |
| ΔCt MED15 normal | 48 | −3.844 | 3.866 | −4.967 | −2.722 | −13.48 | −6.403 | −3.743 | −1.29 | 3.155 |
| ΔΔCt MED15 | 48 | −0.5825 | 3.422 | −1.576 | 0.4112 | −8.2 | −2.64 | −0.475 | 1.49 | 8.49 |
SD, standard deviation; CI, confidence interval; Min, minimum; Q1, first quantile; Med, median; Q3, third quantile; Max, maximum.
Figure 1Boxplots presenting medians, quartiles, minima, and maxima for ΔCt of the four biomarkers in tumoral and benign tissues.
The Pearson correlation matrix between ΔCt values, indicating significant positive correlations between cancerous and normal tissues as well as significant correlations among different biomarkers.
| ΔCt CD16 tumoral | ΔCt CD16 normal | ΔCt CD57 tumoral | ΔCt CD57 normal | ΔCt TGF-β1 tumoral | ΔCt TGF-β1 normal | ΔCt MED15 tumoral | ||
|---|---|---|---|---|---|---|---|---|
| ΔCt CD16 normal | R | |||||||
| ΔCt CD57 tumoral | R | 0.203 | ||||||
| 0.166 | ||||||||
| ΔCt CD57 normal | R | 0.267 | ||||||
| 0.066 | ||||||||
| ΔCt TGF-β1 tumoral | R | 0.001 | 0.195 | |||||
| 0.997 | 0.184 | |||||||
| ΔCt TGF-β1 normal | R | 0.050 | 0.106 | 0.244 | ||||
| 0.734 | 0.474 | 0.095 | ||||||
| ΔCt MED15 tumoral | R | |||||||
| ΔCt MED15 normal | R | 0.269 | 0.224 | 0.204 | ||||
| 0.064 | 0.125 | 0.163 | ||||||
Figure 2ROC curves computed based on sensitivity and specificity of cancer determination (from normal tissue) using ΔCt values.
Factors (including the biomarkers) contributing to the survival of SCC patients, computed using the Cox regression.
| Original model −2 Log Likelihood = 150.585 | B | SE | Wald | HR | 95% CI for HR | ||
|---|---|---|---|---|---|---|---|
| Sex: Male | 0.378 | 0.578 | 0.428 | 0.513 | 1.459 | 0.470 | 4.527 |
| Age at Diagnosis | 0.042 | 0.023 | 3.182 | 0.074 | 1.042 | 0.996 | 1.091 |
| Tumor Volume (ml) | 0.003 | 0.002 | 3.940 | 0.047 | 1.003 | 1.000 | 1.006 |
| Histology Grade | 0.845 | 0.439 | 3.700 | 0.054 | 2.329 | 0.984 | 5.511 |
| Necrosis Presence | 0.435 | 0.597 | 0.530 | 0.467 | 1.545 | 0.479 | 4.979 |
| Lymphatic Invasion | −0.065 | 1.186 | 0.003 | 0.956 | 0.937 | 0.092 | 9.584 |
| Vascular invasion | 0.321 | 1.168 | 0.076 | 0.783 | 1.378 | 0.140 | 13.590 |
| Perineural invasion | −0.084 | 0.593 | 0.020 | 0.887 | 0.919 | 0.287 | 2.942 |
| Extracapsular nodal extension | −0.283 | 1.039 | 0.074 | 0.785 | 0.754 | 0.098 | 5.774 |
| Stage | 0.831 | 0.368 | 5.113 | 2.296 | 1.117 | 4.718 | |
| Smoking | 0.365 | 0.806 | 0.206 | 0.650 | 1.441 | 0.297 | 6.992 |
| Site of primary | 0.131 | 0.123 | 1.141 | 0.286 | 1.140 | 0.896 | 1.451 |
| Type of procedure (reference) | 7.397 | ||||||
| Type of procedure (excisional biopsy) | −9.988 | 501.660 | 0.000 | 0.984 | 0.000 | 0.000 | |
| Type of procedure (incisional biopsy) | 5.462 | 2.008 | 7.397 | 235.475 | 4.598 | 12059 | |
| Family History | −0.243 | 0.594 | 0.168 | 0.682 | 0.784 | 0.245 | 2.511 |
| ΔΔCt CD16 | 0.354 | 0.140 | 6.359 | 1.425 | 1.082 | 1.877 | |
| ΔΔCt TGF-β1 | −0.560 | 0.170 | 10.834 | 0.571 | 0.409 | 0.797 | |
| ΔΔCt MED15 | 0.275 | 0.144 | 3.640 | 0.056 | 1.317 | 0.993 | 1.746 |
| Sex: Male | 0.580 | 0.523 | 1.228 | 0.268 | 1.786 | 0.640 | 4.979 |
| Age at Diagnosis | 0.047 | 0.019 | 6.044 | 1.048 | 1.010 | 1.089 | |
| Tumor Volume (ml) | 0.003 | 0.001 | 4.610 | 1.003 | 1.000 | 1.006 | |
| Histology Grade | 0.908 | 0.404 | 5.035 | 2.478 | 1.122 | 5.475 | |
| Stage | 0.724 | 0.318 | 5.182 | 2.062 | 1.106 | 3.847 | |
| Site of primary | 0.142 | 0.112 | 1.592 | 0.207 | 1.152 | 0.925 | 1.435 |
| Type of procedure (reference) | 11.545 | ||||||
| Type of procedure (excisional biopsy) | −9.752 | 510.340 | 0.000 | 0.985 | 0.000 | 0.000 | |
| Type of procedure (incisional biopsy) | 4.936 | 1.453 | 11.545 | 139.226 | 8.075 | 2401 | |
| ΔΔCt CD16 | 0.337 | 0.137 | 6.035 | 1.401 | 1.071 | 1.834 | |
| ΔΔCt TGF-β1 | −0.515 | 0.144 | 12.717 | 0.598 | 0.450 | 0.793 | |
| ΔΔCt MED15 | 0.285 | 0.118 | 5.796 | 1.330 | 1.054 | 1.677 | |
The variables age, tumor volume, grade, stage, procedure type, ΔΔCt CD16, ΔΔCt TGF-β1, and ΔΔCt MED15 became significant in the optimized model.
B, regression coefficient; SE, standard error; HR, hazard ratio; CI, confidence interval.
Factors contributing to the survival of SCC patients (including the biomarkers), computed using the Cox regression.
| Optimized model-2 Log Likelihood = 151.374 | B | SE | Wald | HR | 95% CI for HR | ||
|---|---|---|---|---|---|---|---|
| Age at Diagnosis | 0.044 | 0.019 | 5.439 | 1.045 | 1.007 | 1.084 | |
| Depth of Invasion (mm) | 0.033 | 0.016 | 4.289 | 1.033 | 1.002 | 1.065 | |
| Lymphatic Invasion | 0.712 | 0.608 | 1.370 | 0.242 | 2.037 | 0.619 | 6.708 |
| Pathological N | 0.657 | 0.264 | 6.179 | 1.929 | 1.149 | 3.238 | |
| Site of primary | 0.146 | 0.115 | 1.611 | 0.204 | 1.157 | 0.924 | 1.449 |
| Type of procedure (reference) | 7.491 | ||||||
| Type of procedure (excisional biopsy) | −11.889 | 499.990 | 0.001 | 0.981 | 0.000 | 0.000 | |
| Type of procedure (incisional biopsy) | 3.694 | 1.350 | 7.490 | 40.215 | 2.854 | 566.697 | |
| Family History | −0.556 | 0.596 | 0.869 | 0.351 | 0.574 | 0.178 | 1.845 |
| ΔΔCt CD16 | 0.279 | 0.111 | 6.297 | 1.321 | 1.063 | 1.642 | |
| ΔΔCt TGF-β1 | −0.324 | 0.112 | 8.432 | 0.723 | 0.581 | 0.900 | |
| ΔΔCt MED15 | 0.128 | 0.078 | 2.702 | 0.100 | 1.136 | 0.976 | 1.323 |
The variables age, depth of invasion, pathological N, procedure type, ΔΔCt CD16, and ΔΔCt TGF-β1 became significant, while ΔΔCt MED15 became marginally significant.
B, regression coefficient; SE, standard error; HR, hazard ratio; CI, confidence interval.
Figure 3ROC curves of the variables contributing to the survival.
Areas under the ROC curves of the variables contributing to survival, indicating the significance of the variable stage.
| Variables | Area | SE | Asymptotic | Asymptotic 95% CI | |
|---|---|---|---|---|---|
| Patient Age | 0.493 | 0.098 | 0.931 | 0.300 | 0.685 |
| Tumor Volume | 0.602 | 0.085 | 0.237 | 0.435 | 0.768 |
| Tumor Histology Grade | 0.590 | 0.084 | 0.297 | 0.425 | 0.755 |
| Tumor Stage | 0.676 | 0.082 | 0.514 | 0.837 | |
| ΔΔCt CD16 | 0.598 | 0.087 | 0.254 | 0.427 | 0.769 |
| ΔΔCt CD57 | 0.635 | 0.087 | 0.116 | 0.465 | 0.805 |
| ΔΔCt TGF-β1 | 0.469 | 0.085 | 0.715 | 0.302 | 0.635 |
| ΔΔCt MED15 | 0.587 | 0.085 | 0.312 | 0.420 | 0.754 |
| Lymphatic Invasion | 0.555 | 0.085 | 0.526 | 0.389 | 0.721 |
| Vascular invasion | 0.493 | 0.086 | 0.931 | 0.324 | 0.661 |
SE, standard error; CI, confidence interval.
Figure 4Cumulative survival plots for biomarker expressions, drawn using the Kaplan-Meier function.
Figure 5Cumulative survival plots for the TNM stage dichotomized into mild and severe stages.
Factors contributing to the survival of SCC patients (including the biomarkers), computed using the Cox regression.
| Original model −2 Log Likelihood = 154.780 | B | SE | Wald | HR | 95% CI for HR | ||
|---|---|---|---|---|---|---|---|
| Sex: Male | 0.281 | 0.620 | 0.206 | 0.650 | 1.325 | 0.393 | 4.470 |
| Age at Diagnosis | 0.036 | 0.020 | 3.175 | 0.075 | 1.037 | 0.996 | 1.079 |
| Tumor Volume (ml) | 0.003 | 0.002 | 3.930 | 1.003 | 1.000 | 1.006 | |
| Histology Grade | 0.858 | 0.452 | 3.593 | 0.058 | 2.358 | 0.971 | 5.723 |
| Necrosis Presence | 0.391 | 0.532 | 0.541 | 0.462 | 1.479 | 0.522 | 4.191 |
| Vascular invasion | −0.008 | 0.611 | 0.000 | 0.990 | 0.992 | 0.300 | 3.285 |
| Perineural invasion | −0.095 | 0.562 | 0.028 | 0.866 | 0.910 | 0.302 | 2.736 |
| Extracapsular nodal extension | −0.261 | 0.965 | 0.073 | 0.786 | 0.770 | 0.116 | 5.101 |
| Stage | 0.744 | 0.392 | 3.616 | 0.057 | 2.105 | 0.977 | 4.535 |
| Smoking | −0.053 | 0.751 | 0.005 | 0.944 | 0.948 | 0.217 | 4.135 |
| Site of primary | 0.071 | 0.112 | 0.399 | 0.528 | 1.074 | 0.861 | 1.338 |
| Type of procedure (reference) | 8.547 | ||||||
| Type of procedure (excisional biopsy) | −9.211 | 497.527 | 0.000 | 0.985 | 0.000 | 0.000 | |
| Type of procedure (incisional biopsy) | 4.408 | 1.508 | 8.547 | 82.133 | 4.276 | 1578 | |
| Family History | 0.220 | 0.588 | 0.140 | 0.708 | 1.246 | 0.394 | 3.941 |
| ΔΔCt CD57 | 0.211 | 0.127 | 2.746 | 0.098 | 1.234 | 0.962 | 1.583 |
| ΔΔCt TGF-β1 | −0.301 | 0.114 | 7.009 | 0.740 | 0.593 | 0.925 | |
| ΔΔCt MED15 | 0.204 | 0.146 | 1.950 | 0.163 | 1.226 | 0.921 | 1.633 |
| Age at Diagnosis | 0.040 | 0.018 | 4.911 | 1.040 | 1.005 | 1.077 | |
| Tumor Volume (ml) | 0.003 | 0.001 | 3.986 | 1.003 | 1.000 | 1.006 | |
| Histology Grade | 0.850 | 0.429 | 3.931 | 2.341 | 1.010 | 5.426 | |
| Necrosis Presence | 0.436 | 0.489 | 0.796 | 0.372 | 1.547 | 0.593 | 4.032 |
| Stage | 0.743 | 0.374 | 3.949 | 2.101 | 1.010 | 4.372 | |
| Site of primary | 0.070 | 0.104 | 0.453 | 0.501 | 1.072 | 0.875 | 1.315 |
| Type of procedure (reference) | 9.658 | ||||||
| Type of procedure (excisional biopsy) | −9.311 | 491.243 | 0.000 | 0.985 | 0.000 | 0.000 | |
| Type of procedure (incisional biopsy) | 4.392 | 1.413 | 9.658 | 80.807 | 5.064 | 1290 | |
| Family History | 0.233 | 0.561 | 0.173 | 0.678 | 1.263 | 0.420 | 3.794 |
| ΔΔCt CD57 | 0.237 | 0.107 | 4.936 | 1.267 | 1.028 | 1.562 | |
| ΔΔCt TGF-β1 | −0.292 | 0.097 | 9.009 | 0.747 | 0.617 | 0.904 | |
| ΔΔCt MED15 | 0.189 | 0.114 | 2.752 | 0.097 | 1.207 | 0.966 | 1.509 |
The variables age, tumor volume, grade, stage, procedure type, ΔΔCt CD57, and ΔΔCt TGF-β1 became significant in the optimized model, while ΔΔCt MED15 became marginally significant.
B, regression coefficient; SE, standard error; HR, hazard ratio; CI, confidence interval.