| Literature DB >> 32183428 |
Yan Gu1,2,3, Xiaozeng Lin1,2,3, Anil Kapoor1,2,4, Mathilda Jing Chow1,2,3, Yanzhi Jiang1,2,3, Kuncheng Zhao1,2,3, Damu Tang1,2,3.
Abstract
FAM84B is a risk gene in breast and prostate cancers. Its upregulation is associated with poor prognosis of prostate cancer, breast cancer, and esophageal squamous cell carcinoma. FAM84B facilitates cancer cell proliferation and invasion in vitro, and xenograft growth in vivo. The FAM84B and Myc genes border a 1.2 Mb gene desert at 8q24.21. Co-amplification of both occurs in 20 cancer types. Mice deficient of a 430 Kb fragment within the 1.2 Mb gene desert have downregulated FAM84B and Myc expressions concurrent with reduced breast cancer growth. Intriguingly, Myc works in partnership with other oncogenes, including Ras. FAM84B shares similarities with the H-Ras-like suppressor (HRASLS) family over their typical LRAT (lecithin:retinal acyltransferase) domain. This domain contains a catalytic triad, H23, H35, and C113, which constitutes the phospholipase A1/2 and O-acyltransferase activities of HRASLS1-5. These enzymatic activities underlie their suppression of Ras. FAM84B conserves H23 and H35 but not C113 with both histidine residues residing within a highly conserved motif that FAM84B shares with HRASLS1-5. Deletion of this motif abolishes FAM84B oncogenic activities. These properties suggest a collaboration of FAM84B with Myc, consistent with the role of the gene desert in strengthening Myc functions. Here, we will discuss recent research on FAM84B-derived oncogenic potential.Entities:
Keywords: 8q24.21 gene desert; FAM84B; H-Ras-like suppressor (HRASLS); Myc; Ras; tumorigenesis
Mesh:
Substances:
Year: 2020 PMID: 32183428 PMCID: PMC7140883 DOI: 10.3390/genes11030312
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Figure 18q24.21 gene desert. The chromosome 8 image was reproduced from MYC GeneCards. The location of indicated gene and transcription direction are indicated. The gene location is defined by the Genome Reference Assembly Human Genome build 38 (GRCh38/hg38), which might be different from previous publications in which the loci of these genes were based on GRCh37/hg19 (an older version). The precise locations are LRATD2 (FAM84B, 126,552,438–126,558,478bp), PCAT1 (126,552,462–127,419,050), PCAT2 (127,072,694–127,227,541), PRNCR1 (127,079,873–127,092,600), CCAT1 (127,207,382–127,219,268), POU5F1B (127,322,183–127,420,066), CCAT2 (127,400,398–127,402,150), CASC8 (127,277,048-127,482,140), CASC11 (127,673,883-127,735,897), CASC19 (127,072,694–127,227,541), CASC21 (127,244,637–127,392,631), Myc (127,735,434–127,742,951), and PVT1 (127,794,523-128,188,211). Among these genes, only FAM84B and Myc are protein coding genes. The gene desert region is bordered by FAM84B and Myc.
Figure 2Systemic literature searching conditions and selection of articles for review.
Association of lnRNA of the 8q24.21 gene desert with cancers.
| lnRNA | PC | GC | ESC | HCC | OVC | CRC | Ref |
|---|---|---|---|---|---|---|---|
| PRNCR1 | Exp + | NA | NA | NA | NA | [ | |
| POU5F1B | Exp + | Prom | NA | Prom | NA | NA | [ |
| PCAT1 | Exp + | NA | NA | NA | Cell prolif + | Poor OS | [ |
| PCAT2 | Exp + | NA | NA | NA | NA | NA | [ |
| CCAT1 | NA | NA | NA | NA | NA | Exp + | [ |
| CCAT2 | NA | NA | NA | NA | NA | Exp + | [ |
| CASC11 | NA | Cell prolif + | Prom | Met + | [ | ||
| CASC19 | NA | NA | NA | NA | NA | Exp + | [ |
| CASC21 | NA | NA | NA | NA | NA | Prom | [ |
PC: prostate cancer; GC: gastric cancer; ESC: esophageal cancer; HCC: hepatocellular carcinoma; OVC: ovarian cancer; CRC: colorectal cancer; NA: not available; Exp +: enhancement of expression; Cell prolif +: enhancement of cell proliferation; AR sig +: enhancement of androgen receptor signaling; Prom: promotion; OS: overall survival.
Figure 3Alignment of FAM84B with the HRASLS family members. The alignment was carried out using CLUSTAL 2.1 Multiple Sequence Alignments. The three active residues (histidine 23/H23, H35, and cysteine 113/C113) are numbered based on HRASLS2 and are indicated (red). The highly conserved residues NCEHFV in HRASLS1-5 are underlined. The FAM84B fragment containing residues 119–145, which shows high homology with HRASLS1-5, is defined as HRASLS domain (119–145).
HRASLS (H-Ras-like suppressor) family suppresses Ras signalling.
| Member | Function | Refs |
|---|---|---|
| HRASLS1 | Inhibition of NIH3 Ras cell proliferation | [ |
| HRASLS2 | Reduction of Ras-GTP level | [ |
| HRASLS3 | Inhibition of Ras ability to transform rat fibroblasts | [ |
| HRASLS4 | Suppression of Ras activation | [ |
Figure 4Co-amplification of FAM84B and Myc associates with poor prognosis in prostate cancer. (A) The 12 published studies within cBioPortal with a total number of patients n = 3546 were analyzed for amplification of the Myc and FAM84B genes. Individual tumors with amplification of either genes are shown, and only tumors with the indicated gene amplification are included. MPC: metastatic prostate cancer; NEPC: neuroendocrine prostate cancer. (B) PCs with co-amplification of FAM84B and Myc are associated with reductions in overall survival. Kaplan–Meier curve and log-rank test were performed using the program provided by cBioPortal. MMS: median months survival.