Literature DB >> 32095790

Adaptive Sparsity Regularization Based Collaborative Clustering for Cancer Prognosis.

Hangfan Liu1, Hongming Li1, Yuemeng Li1, Shi Yin1, Pamela Boimel2, James Janopaul-Naylor2, Haoyu Zhong2, Ying Xiao2, Edgar Ben-Josef2, Yong Fan1.   

Abstract

Radiomic approaches have achieved promising performance in prediction of clinical outcomes of cancer patients. Particularly, feature dimensionality reduction plays an important role in radiomic studies. However, conventional feature dimensionality reduction techniques are not equipped to suppress data noise or utilize latent supervision information of patient data under study (e.g. difference in patients) for learning discriminative low dimensional representations. To achieve feature dimensionality reduction with improved discriminative power and robustness to noisy radiomic features, we develop an adaptive sparsity regularization based collaborative clustering method to simultaneously cluster patients and radiomic features into distinct groups respectively. Our method is built on adaptive sparsity regularized matrix tri-factorization for simultaneous feature denoising and dimension reduction so that the noise is adaptively isolated from the features, and grouping information of patients with distinctive features provides latent supervision information to guide feature dimension reduction. The sparsity regularization is grounded on distribution modeling of transform-domain coefficients in a Bayesian framework. Experiments on synthetic data have demonstrated the effectiveness of the proposed approach in data clustering, and empirical results on an FDG-PET/CT dataset of rectal cancer patients have demonstrated that the proposed method outperforms alternative methods in terms of both patient stratification and prediction of patient clinical outcomes.

Entities:  

Keywords:  Sparsity; collaborative clustering; radiomics; unsupervised learning

Year:  2019        PMID: 32095790      PMCID: PMC7037828          DOI: 10.1007/978-3-030-32251-9_64

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  12 in total

1.  The lasso method for variable selection in the Cox model.

Authors:  R Tibshirani
Journal:  Stat Med       Date:  1997-02-28       Impact factor: 2.373

2.  DEEP CONVOLUTIONAL NEURAL NETWORKS FOR IMAGING DATA BASED SURVIVAL ANALYSIS OF RECTAL CANCER.

Authors:  Hongming Li; Pamela Boimel; James Janopaul-Naylor; Haoyu Zhong; Ying Xiao; Edgar Ben-Josef; Yong Fan
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2019-07-11

Review 3.  Principal component analysis: a review and recent developments.

Authors:  Ian T Jolliffe; Jorge Cadima
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-04-13       Impact factor: 4.226

4.  Evaluation of survival data and two new rank order statistics arising in its consideration.

Authors:  N Mantel
Journal:  Cancer Chemother Rep       Date:  1966-03

5.  Unsupervised machine learning of radiomic features for predicting treatment response and overall survival of early stage non-small cell lung cancer patients treated with stereotactic body radiation therapy.

Authors:  Hongming Li; Maya Galperin-Aizenberg; Daniel Pryma; Charles B Simone; Yong Fan
Journal:  Radiother Oncol       Date:  2018-07-04       Impact factor: 6.280

Review 6.  Radiomics: the process and the challenges.

Authors:  Virendra Kumar; Yuhua Gu; Satrajit Basu; Anders Berglund; Steven A Eschrich; Matthew B Schabath; Kenneth Forster; Hugo J W L Aerts; Andre Dekker; David Fenstermacher; Dmitry B Goldgof; Lawrence O Hall; Philippe Lambin; Yoganand Balagurunathan; Robert A Gatenby; Robert J Gillies
Journal:  Magn Reson Imaging       Date:  2012-08-13       Impact factor: 2.546

7.  A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities.

Authors:  M Vallières; C R Freeman; S R Skamene; I El Naqa
Journal:  Phys Med Biol       Date:  2015-06-29       Impact factor: 3.609

8.  Long-term outcome in patients with a pathological complete response after chemoradiation for rectal cancer: a pooled analysis of individual patient data.

Authors:  Monique Maas; Patty J Nelemans; Vincenzo Valentini; Prajnan Das; Claus Rödel; Li-Jen Kuo; Felipe A Calvo; Julio García-Aguilar; Rob Glynne-Jones; Karin Haustermans; Mohammed Mohiuddin; Salvatore Pucciarelli; William Small; Javier Suárez; George Theodoropoulos; Sebastiano Biondo; Regina G H Beets-Tan; Geerard L Beets
Journal:  Lancet Oncol       Date:  2010-08-06       Impact factor: 41.316

9.  Feature selection by optimizing a lower bound of conditional mutual information.

Authors:  Hanyang Peng; Yong Fan
Journal:  Inf Sci (N Y)       Date:  2017-08-09       Impact factor: 6.795

10.  Radiomics: Images Are More than Pictures, They Are Data.

Authors:  Robert J Gillies; Paul E Kinahan; Hedvig Hricak
Journal:  Radiology       Date:  2015-11-18       Impact factor: 11.105

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  1 in total

1.  Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis.

Authors:  Hangfan Liu; Hongming Li; Mohamad Habes; Yuemeng Li; Pamela Boimel; James Janopaul-Naylor; Ying Xiao; Edgar Ben-Josef; Yong Fan
Journal:  IEEE Trans Biomed Eng       Date:  2020-01-27       Impact factor: 4.538

  1 in total

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