Literature DB >> 31995474

Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis.

Hangfan Liu, Hongming Li, Mohamad Habes, Yuemeng Li, Pamela Boimel, James Janopaul-Naylor, Ying Xiao, Edgar Ben-Josef, Yong Fan.   

Abstract

Feature dimensionality reduction plays an important role in radiomic studies with a large number of features. However, conventional radiomic approaches may suffer from noise, and feature dimensionality reduction techniques are not equipped to utilize latent supervision information of patient data under study, such as differences in patients, to learn discriminative low dimensional representations. To achieve robustness to noise and feature dimensionality reduction with improved discriminative power, we develop a robust collaborative clustering method to simultaneously cluster patients and radiomic features into distinct groups respectively under adaptive sparse regularization. Our method is built upon matrix tri-factorization enhanced by adaptive sparsity regularization for simultaneous feature dimensionality reduction and denoising. Particularly, latent grouping information of patients with distinct radiomic features is learned and utilized as supervision information to guide the feature dimensionality reduction, and noise in radiomic features is adaptively isolated in a Bayesian framework under a general assumption of Laplacian distributions of transform-domain coefficients. Experiments on synthetic data have demonstrated the effectiveness of the proposed approach in data clustering, and evaluation results on an FDG-PET/CT dataset of rectal cancer patients have demonstrated that the proposed method outperforms alternative methods in terms of both patient stratification and prediction of patient clinical outcomes.

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Year:  2020        PMID: 31995474      PMCID: PMC8048106          DOI: 10.1109/TBME.2020.2969839

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  34 in total

1.  Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks.

Authors:  Shi Yin; Qinmu Peng; Hongming Li; Zhengqiang Zhang; Xinge You; Katherine Fischer; Susan L Furth; Gregory E Tasian; Yong Fan
Journal:  Med Image Anal       Date:  2019-11-08       Impact factor: 8.545

2.  The lasso method for variable selection in the Cox model.

Authors:  R Tibshirani
Journal:  Stat Med       Date:  1997-02-28       Impact factor: 2.373

3.  Computer-aided diagnosis of congenital abnormalities of the kidney and urinary tract in children based on ultrasound imaging data by integrating texture image features and deep transfer learning image features.

Authors:  Q Zheng; S L Furth; G E Tasian; Y Fan
Journal:  J Pediatr Urol       Date:  2018-10-31       Impact factor: 1.830

4.  A Deep Learning Model for Predicting Xerostomia Due to Radiation Therapy for Head and Neck Squamous Cell Carcinoma in the RTOG 0522 Clinical Trial.

Authors:  Kuo Men; Huaizhi Geng; Haoyu Zhong; Yong Fan; Alexander Lin; Ying Xiao
Journal:  Int J Radiat Oncol Biol Phys       Date:  2019-06-13       Impact factor: 7.038

Review 5.  Radiomics: the process and the challenges.

Authors:  Virendra Kumar; Yuhua Gu; Satrajit Basu; Anders Berglund; Steven A Eschrich; Matthew B Schabath; Kenneth Forster; Hugo J W L Aerts; Andre Dekker; David Fenstermacher; Dmitry B Goldgof; Lawrence O Hall; Philippe Lambin; Yoganand Balagurunathan; Robert A Gatenby; Robert J Gillies
Journal:  Magn Reson Imaging       Date:  2012-08-13       Impact factor: 2.546

6.  Adaptive Sparsity Regularization Based Collaborative Clustering for Cancer Prognosis.

Authors:  Hangfan Liu; Hongming Li; Yuemeng Li; Shi Yin; Pamela Boimel; James Janopaul-Naylor; Haoyu Zhong; Ying Xiao; Edgar Ben-Josef; Yong Fan
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

7.  Feature selection by optimizing a lower bound of conditional mutual information.

Authors:  Hanyang Peng; Yong Fan
Journal:  Inf Sci (N Y)       Date:  2017-08-09       Impact factor: 6.795

8.  Heterogeneity in [18F]fluorodeoxyglucose positron emission tomography/computed tomography of non-small cell lung carcinoma and its relationship to metabolic parameters and pathologic staging.

Authors:  Ober van Gómez López; Ana María García Vicente; Antonio Francisco Honguero Martínez; Angel María Soriano Castrejón; German Andrés Jiménez Londoño; José Manuel Udias; Pablo León Atance
Journal:  Mol Imaging       Date:  2014       Impact factor: 4.488

9.  Multi-instance Deep Learning with Graph Convolutional Neural Networks for Diagnosis of Kidney Diseases Using Ultrasound Imaging.

Authors:  Shi Yin; Qinmu Peng; Hongming Li; Zhengqiang Zhang; Xinge You; Hangfan Liu; Katherine Fischer; Susan L Furth; Gregory E Tasian; Yong Fan
Journal:  Uncertain Safe Util Machine Learn Med Imaging Clin Image Based Proced (2019)       Date:  2019-10-07

10.  Radiomics-based Prognosis Analysis for Non-Small Cell Lung Cancer.

Authors:  Yucheng Zhang; Anastasia Oikonomou; Alexander Wong; Masoom A Haider; Farzad Khalvati
Journal:  Sci Rep       Date:  2017-04-18       Impact factor: 4.379

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  4 in total

Review 1.  Radiomics in Oncological PET Imaging: A Systematic Review-Part 2, Infradiaphragmatic Cancers, Blood Malignancies, Melanoma and Musculoskeletal Cancers.

Authors:  David Morland; Elizabeth Katherine Anna Triumbari; Luca Boldrini; Roberto Gatta; Daniele Pizzuto; Salvatore Annunziata
Journal:  Diagnostics (Basel)       Date:  2022-05-27

2.  Integration of Deep Learning Radiomics and Counts of Circulating Tumor Cells Improves Prediction of Outcomes of Early Stage NSCLC Patients Treated With Stereotactic Body Radiation Therapy.

Authors:  Zhicheng Jiao; Hongming Li; Ying Xiao; Jay Dorsey; Charles B Simone; Steven Feigenberg; Gary Kao; Yong Fan
Journal:  Int J Radiat Oncol Biol Phys       Date:  2021-11-11       Impact factor: 8.013

3.  Disentangling tau and brain atrophy cluster heterogeneity across the Alzheimer's disease continuum.

Authors:  Jon B Toledo; Hangfan Liu; Michel J Grothe; Tanweer Rashid; Lenore Launer; Leslie M Shaw; Haykel Snoussi; Susan Heckbert; Michael Weiner; John Q Trojanwoski; Sudha Seshadri; Mohamad Habes
Journal:  Alzheimers Dement (N Y)       Date:  2022-05-23

4.  Textured-Based Deep Learning in Prostate Cancer Classification with 3T Multiparametric MRI: Comparison with PI-RADS-Based Classification.

Authors:  Yongkai Liu; Haoxin Zheng; Zhengrong Liang; Qi Miao; Wayne G Brisbane; Leonard S Marks; Steven S Raman; Robert E Reiter; Guang Yang; Kyunghyun Sung
Journal:  Diagnostics (Basel)       Date:  2021-09-28
  4 in total

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