Hongming Li1, Maya Galperin-Aizenberg1, Daniel Pryma1, Charles B Simone2, Yong Fan3. 1. Department of Radiology, Perelman School of Medicine, The University of Pennsylvania, Philadelphia 19104, United States. 2. Maryland Proton Treatment Center, University of Maryland School of Medicine, Baltimore 21201, United States. 3. Department of Radiology, Perelman School of Medicine, The University of Pennsylvania, Philadelphia 19104, United States. Electronic address: yong.fan@ieee.org.
Abstract
BACKGROUND AND PURPOSE: To predict treatment response and survival of NSCLC patients receiving stereotactic body radiation therapy (SBRT), we develop an unsupervised machine learning method for stratifying patients and extracting meta-features simultaneously based on imaging data. MATERIAL AND METHODS: This study was performed based on an 18F-FDG-PET dataset of 100 consecutive patients who were treated with SBRT for early stage NSCLC. Each patient's tumor was characterized by 722 radiomic features. An unsupervised two-way clustering method was used to identify groups of patients and radiomic features simultaneously. The groups of patients were compared in terms of survival and freedom from nodal failure. Meta-features were computed for building survival models to predict survival and free of nodal failure. RESULTS: Differences were found between 2 groups of patients when the patients were clustered into 3 groups in terms of both survival (p = 0.003) and freedom from nodal failure (p = 0.038). Average concordance measures for predicting survival and nodal failure were 0.640±0.029 and 0.664±0.063 respectively, better than those obtained by prediction models built upon clinical variables (p < 0.04). CONCLUSIONS: The evaluation results demonstrate that our method allows us to stratify patients and predict survival and freedom from nodal failure with better performance than current alternative methods.
BACKGROUND AND PURPOSE: To predict treatment response and survival of NSCLCpatients receiving stereotactic body radiation therapy (SBRT), we develop an unsupervised machine learning method for stratifying patients and extracting meta-features simultaneously based on imaging data. MATERIAL AND METHODS: This study was performed based on an 18F-FDG-PET dataset of 100 consecutive patients who were treated with SBRT for early stage NSCLC. Each patient's tumor was characterized by 722 radiomic features. An unsupervised two-way clustering method was used to identify groups of patients and radiomic features simultaneously. The groups of patients were compared in terms of survival and freedom from nodal failure. Meta-features were computed for building survival models to predict survival and free of nodal failure. RESULTS: Differences were found between 2 groups of patients when the patients were clustered into 3 groups in terms of both survival (p = 0.003) and freedom from nodal failure (p = 0.038). Average concordance measures for predicting survival and nodal failure were 0.640±0.029 and 0.664±0.063 respectively, better than those obtained by prediction models built upon clinical variables (p < 0.04). CONCLUSIONS: The evaluation results demonstrate that our method allows us to stratify patients and predict survival and freedom from nodal failure with better performance than current alternative methods.
Authors: Philippe Lambin; Emmanuel Rios-Velazquez; Ralph Leijenaar; Sara Carvalho; Ruud G P M van Stiphout; Patrick Granton; Catharina M L Zegers; Robert Gillies; Ronald Boellard; André Dekker; Hugo J W L Aerts Journal: Eur J Cancer Date: 2012-01-16 Impact factor: 9.162
Authors: Jia Wu; Todd Aguilera; David Shultz; Madhu Gudur; Daniel L Rubin; Billy W Loo; Maximilian Diehn; Ruijiang Li Journal: Radiology Date: 2016-04-05 Impact factor: 11.105
Authors: Joost J M van Griethuysen; Andriy Fedorov; Chintan Parmar; Ahmed Hosny; Nicole Aucoin; Vivek Narayan; Regina G H Beets-Tan; Jean-Christophe Fillion-Robin; Steve Pieper; Hugo J W L Aerts Journal: Cancer Res Date: 2017-11-01 Impact factor: 12.701
Authors: Ralph T H Leijenaar; Georgi Nalbantov; Sara Carvalho; Wouter J C van Elmpt; Esther G C Troost; Ronald Boellaard; Hugo J W L Aerts; Robert J Gillies; Philippe Lambin Journal: Sci Rep Date: 2015-08-05 Impact factor: 4.379
Authors: Ke Nie; Hania Al-Hallaq; X Allen Li; Stanley H Benedict; Jason W Sohn; Jean M Moran; Yong Fan; Mi Huang; Michael V Knopp; Jeff M Michalski; James Monroe; Ceferino Obcemea; Christina I Tsien; Timothy Solberg; Jackie Wu; Ping Xia; Ying Xiao; Issam El Naqa Journal: Int J Radiat Oncol Biol Phys Date: 2019-01-31 Impact factor: 7.038
Authors: Zhicheng Jiao; Hongming Li; Ying Xiao; Charu Aggarwal; Maya Galperin-Aizenberg; Daniel Pryma; Charles B Simone; Steven J Feigenberg; Gary D Kao; Yong Fan Journal: Int J Radiat Oncol Biol Phys Date: 2021-01-19 Impact factor: 7.038
Authors: Harsh Patel; David M Vock; G Elisabeta Marai; Clifton D Fuller; Abdallah S R Mohamed; Guadalupe Canahuate Journal: Sci Rep Date: 2021-07-07 Impact factor: 4.379