Literature DB >> 31929858

DEEP CONVOLUTIONAL NEURAL NETWORKS FOR IMAGING DATA BASED SURVIVAL ANALYSIS OF RECTAL CANCER.

Hongming Li1, Pamela Boimel2, James Janopaul-Naylor2, Haoyu Zhong2, Ying Xiao2, Edgar Ben-Josef2, Yong Fan1.   

Abstract

Recent radiomic studies have witnessed promising performance of deep learning techniques in learning radiomic features and fusing multimodal imaging data. Most existing deep learning based radiomic studies build predictive models in a setting of pattern classification, not appropriate for survival analysis studies where some data samples have incomplete observations. To improve existing survival analysis techniques whose performance is hinged on imaging features, we propose a deep learning method to build survival regression models by optimizing imaging features with deep convolutional neural networks (CNNs) in a proportional hazards model. To make the CNNs applicable to tumors with varied sizes, a spatial pyramid pooling strategy is adopted. Our method has been validated based on a simulated imaging dataset and a FDG-PET/CT dataset of rectal cancer patients treated for locally advanced rectal cancer. Compared with survival prediction models built upon hand-crafted radiomic features using Cox proportional hazards model and random survival forests, our method achieved competitive prediction performance.

Entities:  

Keywords:  CNNs; proportional hazards model; rectal cancer; survival analysis; tumor recurrence

Year:  2019        PMID: 31929858      PMCID: PMC6955095          DOI: 10.1109/ISBI.2019.8759301

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  10 in total

1.  Spatial Pyramid Pooling in Deep Convolutional Networks for Visual Recognition.

Authors:  Kaiming He; Xiangyu Zhang; Shaoqing Ren; Jian Sun
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-09       Impact factor: 6.226

2.  3D Deep Learning for Multi-modal Imaging-Guided Survival Time Prediction of Brain Tumor Patients.

Authors:  Dong Nie; Han Zhang; Ehsan Adeli; Luyan Liu; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

3.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

4.  A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities.

Authors:  M Vallières; C R Freeman; S R Skamene; I El Naqa
Journal:  Phys Med Biol       Date:  2015-06-29       Impact factor: 3.609

5.  Long-term outcome in patients with a pathological complete response after chemoradiation for rectal cancer: a pooled analysis of individual patient data.

Authors:  Monique Maas; Patty J Nelemans; Vincenzo Valentini; Prajnan Das; Claus Rödel; Li-Jen Kuo; Felipe A Calvo; Julio García-Aguilar; Rob Glynne-Jones; Karin Haustermans; Mohammed Mohiuddin; Salvatore Pucciarelli; William Small; Javier Suárez; George Theodoropoulos; Sebastiano Biondo; Regina G H Beets-Tan; Geerard L Beets
Journal:  Lancet Oncol       Date:  2010-08-06       Impact factor: 41.316

Review 6.  Radiomics: extracting more information from medical images using advanced feature analysis.

Authors:  Philippe Lambin; Emmanuel Rios-Velazquez; Ralph Leijenaar; Sara Carvalho; Ruud G P M van Stiphout; Patrick Granton; Catharina M L Zegers; Robert Gillies; Ronald Boellard; André Dekker; Hugo J W L Aerts
Journal:  Eur J Cancer       Date:  2012-01-16       Impact factor: 9.162

7.  Regression modelling strategies for improved prognostic prediction.

Authors:  F E Harrell; K L Lee; R M Califf; D B Pryor; R A Rosati
Journal:  Stat Med       Date:  1984 Apr-Jun       Impact factor: 2.373

8.  Rectal Cancer: Assessment of Neoadjuvant Chemoradiation Outcome based on Radiomics of Multiparametric MRI.

Authors:  Ke Nie; Liming Shi; Qin Chen; Xi Hu; Salma K Jabbour; Ning Yue; Tianye Niu; Xiaonan Sun
Journal:  Clin Cancer Res       Date:  2016-05-16       Impact factor: 12.531

9.  Can clinical factors be used as a selection tool for an organ-preserving strategy in rectal cancer?

Authors:  Ines Joye; Annelies Debucquoy; Steffen Fieuws; Albert Wolthuis; Xavier Sagaert; André D'Hoore; Karin Haustermans
Journal:  Acta Oncol       Date:  2016-05-04       Impact factor: 4.089

10.  Radiomics: Images Are More than Pictures, They Are Data.

Authors:  Robert J Gillies; Paul E Kinahan; Hedvig Hricak
Journal:  Radiology       Date:  2015-11-18       Impact factor: 11.105

  10 in total
  8 in total

1.  Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis.

Authors:  Hangfan Liu; Hongming Li; Mohamad Habes; Yuemeng Li; Pamela Boimel; James Janopaul-Naylor; Ying Xiao; Edgar Ben-Josef; Yong Fan
Journal:  IEEE Trans Biomed Eng       Date:  2020-01-27       Impact factor: 4.538

Review 2.  Radiomics in Oncological PET Imaging: A Systematic Review-Part 2, Infradiaphragmatic Cancers, Blood Malignancies, Melanoma and Musculoskeletal Cancers.

Authors:  David Morland; Elizabeth Katherine Anna Triumbari; Luca Boldrini; Roberto Gatta; Daniele Pizzuto; Salvatore Annunziata
Journal:  Diagnostics (Basel)       Date:  2022-05-27

3.  Integration of Deep Learning Radiomics and Counts of Circulating Tumor Cells Improves Prediction of Outcomes of Early Stage NSCLC Patients Treated With Stereotactic Body Radiation Therapy.

Authors:  Zhicheng Jiao; Hongming Li; Ying Xiao; Jay Dorsey; Charles B Simone; Steven Feigenberg; Gary Kao; Yong Fan
Journal:  Int J Radiat Oncol Biol Phys       Date:  2021-11-11       Impact factor: 8.013

4.  Adaptive Sparsity Regularization Based Collaborative Clustering for Cancer Prognosis.

Authors:  Hangfan Liu; Hongming Li; Yuemeng Li; Shi Yin; Pamela Boimel; James Janopaul-Naylor; Haoyu Zhong; Ying Xiao; Edgar Ben-Josef; Yong Fan
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

5.  Segmenting Thoracic Cavities with Neoplastic Lesions: A Head-to-head Benchmark with Fully Convolutional Neural Networks.

Authors:  Zhao Li; Rongbin Li; Kendall J Kiser; Luca Giancardo; W Jim Zheng
Journal:  ACM BCB       Date:  2021-08-01

6.  A survival model generalized to regression learning algorithms.

Authors:  Yuanfang Guan; Hongyang Li; Daiyao Yi; Dongdong Zhang; Changchang Yin; Keyu Li; Ping Zhang
Journal:  Nat Comput Sci       Date:  2021-06-21

7.  Radiomic analysis for predicting prognosis of colorectal cancer from preoperative 18F-FDG PET/CT.

Authors:  Lilang Lv; Bowen Xin; Yichao Hao; Ziyi Yang; Junyan Xu; Lisheng Wang; Xiuying Wang; Shaoli Song; Xiaomao Guo
Journal:  J Transl Med       Date:  2022-02-02       Impact factor: 5.531

Review 8.  Applications of Artificial Intelligence in Screening, Diagnosis, Treatment, and Prognosis of Colorectal Cancer.

Authors:  Hang Qiu; Shuhan Ding; Jianbo Liu; Liya Wang; Xiaodong Wang
Journal:  Curr Oncol       Date:  2022-03-07       Impact factor: 3.677

  8 in total

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