Literature DB >> 30589142

Physical Chemistry of Cellular Liquid-Phase Separation.

Emily P Bentley1, Benjamin B Frey1, Ashok A Deniz1.   

Abstract

Compartmentalization of biochemical processes is essential for cell function. Although membrane-bound organelles are well studied in this context, recent work has shown that phase separation is a key contributor to cellular compartmentalization through the formation of liquid-like membraneless organelles (MLOs). In this Minireview, the key mechanistic concepts that underlie MLO dynamics and function are first briefly discussed, including the relevant noncovalent interaction chemistry and polymer physical chemistry. Next, a few examples of MLOs and relevant proteins are given, along with their functions, which highlight the relevance of the above concepts. The developing area of active matter and non-equilibrium systems, which can give rise to unexpected effects in fluctuating cellular conditions, are also discussed. Finally, our thoughts for emerging and future directions in the field are discussed, including in vitro and in vivo studies of MLO physical chemistry and function.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  active matter; biophysics; liquid-liquid phase separation; membraneless organelles

Year:  2019        PMID: 30589142      PMCID: PMC6551525          DOI: 10.1002/chem.201805093

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  87 in total

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6.  Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.

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7.  Beyond stereospecificity: liquids and mesoscale organization of cytoplasm.

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8.  Rubisco small-subunit α-helices control pyrenoid formation in Chlamydomonas.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

9.  Phase transitions in the assembly of multivalent signalling proteins.

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  13 in total

Review 1.  Liquid-Liquid Phase Separation and Its Mechanistic Role in Pathological Protein Aggregation.

Authors:  W Michael Babinchak; Witold K Surewicz
Journal:  J Mol Biol       Date:  2020-03-10       Impact factor: 5.469

Review 2.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

3.  Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior.

Authors:  Benjamin S Schuster; Gregory L Dignon; Wai Shing Tang; Fleurie M Kelley; Aishwarya Kanchi Ranganath; Craig N Jahnke; Alison G Simpkins; Roshan Mammen Regy; Daniel A Hammer; Matthew C Good; Jeetain Mittal
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-11       Impact factor: 11.205

Review 4.  Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties.

Authors:  Gregory L Dignon; Robert B Best; Jeetain Mittal
Journal:  Annu Rev Phys Chem       Date:  2020-04-20       Impact factor: 12.703

Review 5.  Conformational Dynamics of Intrinsically Disordered Proteins Regulate Biomolecular Condensate Chemistry.

Authors:  Anton Abyzov; Martin Blackledge; Markus Zweckstetter
Journal:  Chem Rev       Date:  2022-02-18       Impact factor: 60.622

Review 6.  The Proteome Folding Problem and Cellular Proteostasis.

Authors:  Evan T Powers; Lila M Gierasch
Journal:  J Mol Biol       Date:  2021-08-13       Impact factor: 6.151

Review 7.  Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.

Authors:  Irem Nasir; Paulo L Onuchic; Sergio R Labra; Ashok A Deniz
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-05-02       Impact factor: 3.036

Review 8.  Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery.

Authors:  Tongyin Zheng; Yiran Yang; Carlos A Castañeda
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

Review 9.  Molecular structure in biomolecular condensates.

Authors:  Ivan Peran; Tanja Mittag
Journal:  Curr Opin Struct Biol       Date:  2019-11-29       Impact factor: 6.809

10.  DrLLPS: a data resource of liquid-liquid phase separation in eukaryotes.

Authors:  Wanshan Ning; Yaping Guo; Shaofeng Lin; Bin Mei; Yu Wu; Peiran Jiang; Xiaodan Tan; Weizhi Zhang; Guowei Chen; Di Peng; Liang Chu; Yu Xue
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

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