Literature DB >> 32312191

Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties.

Gregory L Dignon1,2, Robert B Best3, Jeetain Mittal1.   

Abstract

Biological phase separation is known to be important for cellular organization, which has recently been extended to a new class of biomolecules that form liquid-like droplets coexisting with the surrounding cellular or extracellular environment. These droplets are termed membraneless organelles, as they lack a dividing lipid membrane, and are formed through liquid-liquid phase separation (LLPS). Elucidating the molecular determinants of phase separation is a critical challenge for the field, as we are still at the early stages of understanding how cells may promote and regulate functions that are driven by LLPS. In this review, we discuss the role that disorder, perturbations to molecular interactions resulting from sequence, posttranslational modifications, and various regulatory stimuli play on protein LLPS, with a particular focus on insights that may be obtained from simulation and theory. We finally discuss how these molecular driving forces alter multicomponent phase separation and selectivity.

Entities:  

Keywords:  biomolecular condensates; intrinsically disordered proteins; multicomponent phase separation; phase separation

Mesh:

Substances:

Year:  2020        PMID: 32312191      PMCID: PMC7469089          DOI: 10.1146/annurev-physchem-071819-113553

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  141 in total

1.  A theoretical method to compute sequence dependent configurational properties in charged polymers and proteins.

Authors:  Lucas Sawle; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

2.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

3.  Inferring properties of disordered chains from FRET transfer efficiencies.

Authors:  Wenwei Zheng; Gül H Zerze; Alessandro Borgia; Jeetain Mittal; Benjamin Schuler; Robert B Best
Journal:  J Chem Phys       Date:  2018-03-28       Impact factor: 3.488

Review 4.  RNA helicases at work: binding and rearranging.

Authors:  Eckhard Jankowsky
Journal:  Trends Biochem Sci       Date:  2011-01       Impact factor: 13.807

5.  The Eukaryotic CO2-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization.

Authors:  Elizabeth S Freeman Rosenzweig; Bin Xu; Luis Kuhn Cuellar; Antonio Martinez-Sanchez; Miroslava Schaffer; Mike Strauss; Heather N Cartwright; Pierre Ronceray; Jürgen M Plitzko; Friedrich Förster; Ned S Wingreen; Benjamin D Engel; Luke C M Mackinder; Martin C Jonikas
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

6.  Partial demixing of RNA-protein complexes leads to intradroplet patterning in phase-separated biological condensates.

Authors:  Kelsey Gasior; Jia Zhao; Grace McLaughlin; M Gregory Forest; Amy S Gladfelter; Jay Newby
Journal:  Phys Rev E       Date:  2019-01       Impact factor: 2.529

7.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Authors:  Alexander E Conicella; Gül H Zerze; Jeetain Mittal; Nicolas L Fawzi
Journal:  Structure       Date:  2016-08-18       Impact factor: 5.006

Review 8.  The solvent side of proteinaceous membrane-less organelles in light of aqueous two-phase systems.

Authors:  Boris Y Zaslavsky; Luisa A Ferreira; April L Darling; Vladimir N Uversky
Journal:  Int J Biol Macromol       Date:  2018-06-14       Impact factor: 6.953

9.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

10.  Sequence determinants of protein phase behavior from a coarse-grained model.

Authors:  Gregory L Dignon; Wenwei Zheng; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  PLoS Comput Biol       Date:  2018-01-24       Impact factor: 4.475

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  72 in total

Review 1.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

2.  Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation?

Authors:  Thuy P Dao; Carlos A Castañeda
Journal:  Bioessays       Date:  2020-09-03       Impact factor: 4.345

Review 3.  Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery.

Authors:  Tongyin Zheng; Yiran Yang; Carlos A Castañeda
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

4.  Real-time observation of structure and dynamics during the liquid-to-solid transition of FUS LC.

Authors:  Raymond F Berkeley; Maryam Kashefi; Galia T Debelouchina
Journal:  Biophys J       Date:  2021-02-17       Impact factor: 4.033

Review 5.  Phase separation of DNA: From past to present.

Authors:  John T King; Anisha Shakya
Journal:  Biophys J       Date:  2021-02-12       Impact factor: 4.033

6.  A predictive coarse-grained model for position-specific effects of post-translational modifications.

Authors:  Theodora Myrto Perdikari; Nina Jovic; Gregory L Dignon; Young C Kim; Nicolas L Fawzi; Jeetain Mittal
Journal:  Biophys J       Date:  2021-02-12       Impact factor: 4.033

7.  Molecular Details of Protein Condensates Probed by Microsecond Long Atomistic Simulations.

Authors:  Wenwei Zheng; Gregory L Dignon; Nina Jovic; Xichen Xu; Roshan M Regy; Nicolas L Fawzi; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  J Phys Chem B       Date:  2020-12-10       Impact factor: 2.991

Review 8.  Liquid-liquid phase separation of tau: From molecular biophysics to physiology and disease.

Authors:  Sandeep K Rai; Adriana Savastano; Priyanka Singh; Samrat Mukhopadhyay; Markus Zweckstetter
Journal:  Protein Sci       Date:  2021-05-14       Impact factor: 6.725

9.  CRISPR-based DNA and RNA detection with liquid-liquid phase separation.

Authors:  Willem Kasper Spoelstra; Jeroen M Jacques; Rodrigo Gonzalez-Linares; Franklin L Nobrega; Anna C Haagsma; Marileen Dogterom; Dimphna H Meijer; Timon Idema; Stan J J Brouns; Louis Reese
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

10.  ATP biphasically modulates LLPS of TDP-43 PLD by specifically binding arginine residues.

Authors:  Mei Dang; Liangzhong Lim; Jian Kang; Jianxing Song
Journal:  Commun Biol       Date:  2021-06-10
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